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Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot

Although several genes involved in the development of Tetralogy of Fallot have been identified, no genetic diagnosis is available for the majority of patients. Low statistical power may have prevented the identification of further causative genes in gene-by-gene survey analyses. Thus, bigger samples...

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Autores principales: Chelu, Alexandru, Williams, Simon G., Keavney, Bernard D., Talavera, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Nature Singapore 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7613636/
https://www.ncbi.nlm.nih.gov/pubmed/35718831
http://dx.doi.org/10.1038/s10038-022-01051-y
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author Chelu, Alexandru
Williams, Simon G.
Keavney, Bernard D.
Talavera, David
author_facet Chelu, Alexandru
Williams, Simon G.
Keavney, Bernard D.
Talavera, David
author_sort Chelu, Alexandru
collection PubMed
description Although several genes involved in the development of Tetralogy of Fallot have been identified, no genetic diagnosis is available for the majority of patients. Low statistical power may have prevented the identification of further causative genes in gene-by-gene survey analyses. Thus, bigger samples and/or novel analytic approaches may be necessary. We studied if a joint analysis of groups of functionally related genes might be a useful alternative approach. Our reanalysis of whole-exome sequencing data identified 12 groups of genes that exceedingly contribute to the burden of Tetralogy of Fallot. Further analysis of those groups showed that genes with high-impact variants tend to interact with each other. Thus, our results strongly suggest that additional candidate genes may be found by studying the protein interaction network of known causative genes. Moreover, our results show that the joint analysis of functionally related genes can be a useful complementary approach to classical single-gene analyses.
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spelling pubmed-76136362022-09-27 Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot Chelu, Alexandru Williams, Simon G. Keavney, Bernard D. Talavera, David J Hum Genet Brief Communication Although several genes involved in the development of Tetralogy of Fallot have been identified, no genetic diagnosis is available for the majority of patients. Low statistical power may have prevented the identification of further causative genes in gene-by-gene survey analyses. Thus, bigger samples and/or novel analytic approaches may be necessary. We studied if a joint analysis of groups of functionally related genes might be a useful alternative approach. Our reanalysis of whole-exome sequencing data identified 12 groups of genes that exceedingly contribute to the burden of Tetralogy of Fallot. Further analysis of those groups showed that genes with high-impact variants tend to interact with each other. Thus, our results strongly suggest that additional candidate genes may be found by studying the protein interaction network of known causative genes. Moreover, our results show that the joint analysis of functionally related genes can be a useful complementary approach to classical single-gene analyses. Springer Nature Singapore 2022-06-20 2022 /pmc/articles/PMC7613636/ /pubmed/35718831 http://dx.doi.org/10.1038/s10038-022-01051-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Brief Communication
Chelu, Alexandru
Williams, Simon G.
Keavney, Bernard D.
Talavera, David
Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot
title Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot
title_full Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot
title_fullStr Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot
title_full_unstemmed Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot
title_short Joint analysis of functionally related genes yields further candidates associated with Tetralogy of Fallot
title_sort joint analysis of functionally related genes yields further candidates associated with tetralogy of fallot
topic Brief Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7613636/
https://www.ncbi.nlm.nih.gov/pubmed/35718831
http://dx.doi.org/10.1038/s10038-022-01051-y
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