Cargando…

Reflexive standardization and the resolution of uncertainty in the genomics clinic

In genomics, the clinical application of Next Generation Sequencing technologies (such as Whole Genome or Exome Sequencing) has attracted considerable attention from UK policymakers, interested in the benefits such technologies could bring the National Health Service. However, this boosterism plays...

Descripción completa

Detalles Bibliográficos
Autores principales: Hedgecoe, Adam, Job, Kathleen, Clarke, Angus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: SAGE Publications 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7614615/
https://www.ncbi.nlm.nih.gov/pubmed/36922706
http://dx.doi.org/10.1177/03063127231154863
_version_ 1783605627839315968
author Hedgecoe, Adam
Job, Kathleen
Clarke, Angus
author_facet Hedgecoe, Adam
Job, Kathleen
Clarke, Angus
author_sort Hedgecoe, Adam
collection PubMed
description In genomics, the clinical application of Next Generation Sequencing technologies (such as Whole Genome or Exome Sequencing) has attracted considerable attention from UK policymakers, interested in the benefits such technologies could bring the National Health Service. However, this boosterism plays little attention to the challenges raised by a kind of result known as a Variant of Uncertain Significance, or VUS, which require clinical geneticists and related colleagues to classify ambiguous genomic variants as ‘benign’ or ‘pathogenic’. With a rigorous analysis based on data gathered at 290 clinical meetings over a two-year period, this paper presents the first ethnographic account of decision-making around NGS technology in a NHS clinical genomics service, broadening our understanding of the role formal criteria play in the classification of VUS. Drawing on Stefan Timmermans’ concept of ‘reflexive standardisation’ to explore the way in which clinical genetics staff classify such variants this paper explores the application of a set of criteria drafted by the American College of Medical Genetics and Genomics, highlighting the flexible way in which various resources – variant databases, computer programmes, the research literature – are drawn on to reach a decision. A crucial insight is how professionals’ perception of, and trust in, the clinical practice at other genomics centres in the NHS, shapes their own application of criteria and the classification of a VUS as either benign or pathogenic.
format Online
Article
Text
id pubmed-7614615
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher SAGE Publications
record_format MEDLINE/PubMed
spelling pubmed-76146152023-06-03 Reflexive standardization and the resolution of uncertainty in the genomics clinic Hedgecoe, Adam Job, Kathleen Clarke, Angus Soc Stud Sci Articles In genomics, the clinical application of Next Generation Sequencing technologies (such as Whole Genome or Exome Sequencing) has attracted considerable attention from UK policymakers, interested in the benefits such technologies could bring the National Health Service. However, this boosterism plays little attention to the challenges raised by a kind of result known as a Variant of Uncertain Significance, or VUS, which require clinical geneticists and related colleagues to classify ambiguous genomic variants as ‘benign’ or ‘pathogenic’. With a rigorous analysis based on data gathered at 290 clinical meetings over a two-year period, this paper presents the first ethnographic account of decision-making around NGS technology in a NHS clinical genomics service, broadening our understanding of the role formal criteria play in the classification of VUS. Drawing on Stefan Timmermans’ concept of ‘reflexive standardisation’ to explore the way in which clinical genetics staff classify such variants this paper explores the application of a set of criteria drafted by the American College of Medical Genetics and Genomics, highlighting the flexible way in which various resources – variant databases, computer programmes, the research literature – are drawn on to reach a decision. A crucial insight is how professionals’ perception of, and trust in, the clinical practice at other genomics centres in the NHS, shapes their own application of criteria and the classification of a VUS as either benign or pathogenic. SAGE Publications 2023-03-15 2023-06 /pmc/articles/PMC7614615/ /pubmed/36922706 http://dx.doi.org/10.1177/03063127231154863 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/) which permits any use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page (https://us.sagepub.com/en-us/nam/open-access-at-sage).
spellingShingle Articles
Hedgecoe, Adam
Job, Kathleen
Clarke, Angus
Reflexive standardization and the resolution of uncertainty in the genomics clinic
title Reflexive standardization and the resolution of uncertainty in the genomics clinic
title_full Reflexive standardization and the resolution of uncertainty in the genomics clinic
title_fullStr Reflexive standardization and the resolution of uncertainty in the genomics clinic
title_full_unstemmed Reflexive standardization and the resolution of uncertainty in the genomics clinic
title_short Reflexive standardization and the resolution of uncertainty in the genomics clinic
title_sort reflexive standardization and the resolution of uncertainty in the genomics clinic
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7614615/
https://www.ncbi.nlm.nih.gov/pubmed/36922706
http://dx.doi.org/10.1177/03063127231154863
work_keys_str_mv AT hedgecoeadam reflexivestandardizationandtheresolutionofuncertaintyinthegenomicsclinic
AT jobkathleen reflexivestandardizationandtheresolutionofuncertaintyinthegenomicsclinic
AT clarkeangus reflexivestandardizationandtheresolutionofuncertaintyinthegenomicsclinic