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An approach to automatic classification of Culicoides species by learning the wing morphology

Fast and accurate identification of biting midges is crucial in the study of Culicoides-borne diseases. In this work, we propose a two-stage method for automatically analyzing Culicoides (Diptera: Ceratopogonidae) species. First, an image preprocessing task composed of median and Wiener filters foll...

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Autores principales: Venegas, Pablo, Pérez, Noel, Zapata, Sonia, Mosquera, Juan Daniel, Augot, Denis, Rojo-Álvarez, José Luis, Benítez, Diego
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7641368/
https://www.ncbi.nlm.nih.gov/pubmed/33147271
http://dx.doi.org/10.1371/journal.pone.0241798
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author Venegas, Pablo
Pérez, Noel
Zapata, Sonia
Mosquera, Juan Daniel
Augot, Denis
Rojo-Álvarez, José Luis
Benítez, Diego
author_facet Venegas, Pablo
Pérez, Noel
Zapata, Sonia
Mosquera, Juan Daniel
Augot, Denis
Rojo-Álvarez, José Luis
Benítez, Diego
author_sort Venegas, Pablo
collection PubMed
description Fast and accurate identification of biting midges is crucial in the study of Culicoides-borne diseases. In this work, we propose a two-stage method for automatically analyzing Culicoides (Diptera: Ceratopogonidae) species. First, an image preprocessing task composed of median and Wiener filters followed by equalization and morphological operations is used to improve the quality of the wing image in order to allow an adequate segmentation of particles of interest. Then, the segmentation of the zones of interest inside the biting midge wing is made using the watershed transform. The proposed method is able to produce optimal feature vectors that help to identify Culicoides species. A database containing wing images of C. obsoletus, C. pusillus, C. foxi, and C. insignis species was used to test its performance. Feature relevance analysis indicated that the mean of hydraulic radius and eccentricity were relevant for the decision boundary between C. obsoletus and C. pusillus species. In contrast, the number of particles and the mean of the hydraulic radius was relevant for deciding between C. foxi and C. insignis species. Meanwhile, for distinguishing among the four species, the number of particles and zones, and the mean of circularity were the most relevant features. The linear discriminant analysis classifier was the best model for the three experimental classification scenarios previously described, achieving averaged areas under the receiver operating characteristic curve of 0.98, 0.90, and 0.96, respectively.
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spelling pubmed-76413682020-11-10 An approach to automatic classification of Culicoides species by learning the wing morphology Venegas, Pablo Pérez, Noel Zapata, Sonia Mosquera, Juan Daniel Augot, Denis Rojo-Álvarez, José Luis Benítez, Diego PLoS One Research Article Fast and accurate identification of biting midges is crucial in the study of Culicoides-borne diseases. In this work, we propose a two-stage method for automatically analyzing Culicoides (Diptera: Ceratopogonidae) species. First, an image preprocessing task composed of median and Wiener filters followed by equalization and morphological operations is used to improve the quality of the wing image in order to allow an adequate segmentation of particles of interest. Then, the segmentation of the zones of interest inside the biting midge wing is made using the watershed transform. The proposed method is able to produce optimal feature vectors that help to identify Culicoides species. A database containing wing images of C. obsoletus, C. pusillus, C. foxi, and C. insignis species was used to test its performance. Feature relevance analysis indicated that the mean of hydraulic radius and eccentricity were relevant for the decision boundary between C. obsoletus and C. pusillus species. In contrast, the number of particles and the mean of the hydraulic radius was relevant for deciding between C. foxi and C. insignis species. Meanwhile, for distinguishing among the four species, the number of particles and zones, and the mean of circularity were the most relevant features. The linear discriminant analysis classifier was the best model for the three experimental classification scenarios previously described, achieving averaged areas under the receiver operating characteristic curve of 0.98, 0.90, and 0.96, respectively. Public Library of Science 2020-11-04 /pmc/articles/PMC7641368/ /pubmed/33147271 http://dx.doi.org/10.1371/journal.pone.0241798 Text en © 2020 Venegas et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Venegas, Pablo
Pérez, Noel
Zapata, Sonia
Mosquera, Juan Daniel
Augot, Denis
Rojo-Álvarez, José Luis
Benítez, Diego
An approach to automatic classification of Culicoides species by learning the wing morphology
title An approach to automatic classification of Culicoides species by learning the wing morphology
title_full An approach to automatic classification of Culicoides species by learning the wing morphology
title_fullStr An approach to automatic classification of Culicoides species by learning the wing morphology
title_full_unstemmed An approach to automatic classification of Culicoides species by learning the wing morphology
title_short An approach to automatic classification of Culicoides species by learning the wing morphology
title_sort approach to automatic classification of culicoides species by learning the wing morphology
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7641368/
https://www.ncbi.nlm.nih.gov/pubmed/33147271
http://dx.doi.org/10.1371/journal.pone.0241798
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