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An approach to automatic classification of Culicoides species by learning the wing morphology
Fast and accurate identification of biting midges is crucial in the study of Culicoides-borne diseases. In this work, we propose a two-stage method for automatically analyzing Culicoides (Diptera: Ceratopogonidae) species. First, an image preprocessing task composed of median and Wiener filters foll...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7641368/ https://www.ncbi.nlm.nih.gov/pubmed/33147271 http://dx.doi.org/10.1371/journal.pone.0241798 |
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author | Venegas, Pablo Pérez, Noel Zapata, Sonia Mosquera, Juan Daniel Augot, Denis Rojo-Álvarez, José Luis Benítez, Diego |
author_facet | Venegas, Pablo Pérez, Noel Zapata, Sonia Mosquera, Juan Daniel Augot, Denis Rojo-Álvarez, José Luis Benítez, Diego |
author_sort | Venegas, Pablo |
collection | PubMed |
description | Fast and accurate identification of biting midges is crucial in the study of Culicoides-borne diseases. In this work, we propose a two-stage method for automatically analyzing Culicoides (Diptera: Ceratopogonidae) species. First, an image preprocessing task composed of median and Wiener filters followed by equalization and morphological operations is used to improve the quality of the wing image in order to allow an adequate segmentation of particles of interest. Then, the segmentation of the zones of interest inside the biting midge wing is made using the watershed transform. The proposed method is able to produce optimal feature vectors that help to identify Culicoides species. A database containing wing images of C. obsoletus, C. pusillus, C. foxi, and C. insignis species was used to test its performance. Feature relevance analysis indicated that the mean of hydraulic radius and eccentricity were relevant for the decision boundary between C. obsoletus and C. pusillus species. In contrast, the number of particles and the mean of the hydraulic radius was relevant for deciding between C. foxi and C. insignis species. Meanwhile, for distinguishing among the four species, the number of particles and zones, and the mean of circularity were the most relevant features. The linear discriminant analysis classifier was the best model for the three experimental classification scenarios previously described, achieving averaged areas under the receiver operating characteristic curve of 0.98, 0.90, and 0.96, respectively. |
format | Online Article Text |
id | pubmed-7641368 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-76413682020-11-10 An approach to automatic classification of Culicoides species by learning the wing morphology Venegas, Pablo Pérez, Noel Zapata, Sonia Mosquera, Juan Daniel Augot, Denis Rojo-Álvarez, José Luis Benítez, Diego PLoS One Research Article Fast and accurate identification of biting midges is crucial in the study of Culicoides-borne diseases. In this work, we propose a two-stage method for automatically analyzing Culicoides (Diptera: Ceratopogonidae) species. First, an image preprocessing task composed of median and Wiener filters followed by equalization and morphological operations is used to improve the quality of the wing image in order to allow an adequate segmentation of particles of interest. Then, the segmentation of the zones of interest inside the biting midge wing is made using the watershed transform. The proposed method is able to produce optimal feature vectors that help to identify Culicoides species. A database containing wing images of C. obsoletus, C. pusillus, C. foxi, and C. insignis species was used to test its performance. Feature relevance analysis indicated that the mean of hydraulic radius and eccentricity were relevant for the decision boundary between C. obsoletus and C. pusillus species. In contrast, the number of particles and the mean of the hydraulic radius was relevant for deciding between C. foxi and C. insignis species. Meanwhile, for distinguishing among the four species, the number of particles and zones, and the mean of circularity were the most relevant features. The linear discriminant analysis classifier was the best model for the three experimental classification scenarios previously described, achieving averaged areas under the receiver operating characteristic curve of 0.98, 0.90, and 0.96, respectively. Public Library of Science 2020-11-04 /pmc/articles/PMC7641368/ /pubmed/33147271 http://dx.doi.org/10.1371/journal.pone.0241798 Text en © 2020 Venegas et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Venegas, Pablo Pérez, Noel Zapata, Sonia Mosquera, Juan Daniel Augot, Denis Rojo-Álvarez, José Luis Benítez, Diego An approach to automatic classification of Culicoides species by learning the wing morphology |
title | An approach to automatic classification of Culicoides species by learning the wing morphology |
title_full | An approach to automatic classification of Culicoides species by learning the wing morphology |
title_fullStr | An approach to automatic classification of Culicoides species by learning the wing morphology |
title_full_unstemmed | An approach to automatic classification of Culicoides species by learning the wing morphology |
title_short | An approach to automatic classification of Culicoides species by learning the wing morphology |
title_sort | approach to automatic classification of culicoides species by learning the wing morphology |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7641368/ https://www.ncbi.nlm.nih.gov/pubmed/33147271 http://dx.doi.org/10.1371/journal.pone.0241798 |
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