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Scaling effect in COVID-19 spreading: The role of heterogeneity in a hybrid ODE-network model with restrictions on the inter-cities flow

The new Covid-19 pandemic has left traces of suffering and devastation to individuals of almost all countries worldwide and severe impact on the global economy. Understanding the clinical characteristics, interactions with the environment, and the variables that favor or hinder its dissemination hel...

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Autores principales: Miranda, José Garcia Vivas, Silva, Mateus Souza, Bertolino, José Gabriel, Vasconcelos, Rodrigo Nogueira, Cambui, Elaine Cristina Barbosa, Araújo, Marcio Luis Valença, Saba, Hugo, Costa, Diego Pereira, Duverger, Soltan Galano, Oliveira, Matheus Teles de, Neto, Hildebrando Simões de Araújo, Franca-Rocha, Washington de Jesus Sant’anna, Jorge, Daniel Cardoso Pereira, de Oliveira, Juliane Fonseca, Andrade, Roberto Fernandes Silva, do Rosário, Rafael Silva
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7641580/
https://www.ncbi.nlm.nih.gov/pubmed/33169041
http://dx.doi.org/10.1016/j.physd.2020.132792
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author Miranda, José Garcia Vivas
Silva, Mateus Souza
Bertolino, José Gabriel
Vasconcelos, Rodrigo Nogueira
Cambui, Elaine Cristina Barbosa
Araújo, Marcio Luis Valença
Saba, Hugo
Costa, Diego Pereira
Duverger, Soltan Galano
Oliveira, Matheus Teles de
Neto, Hildebrando Simões de Araújo
Franca-Rocha, Washington de Jesus Sant’anna
Jorge, Daniel Cardoso Pereira
de Oliveira, Juliane Fonseca
Andrade, Roberto Fernandes Silva
do Rosário, Rafael Silva
author_facet Miranda, José Garcia Vivas
Silva, Mateus Souza
Bertolino, José Gabriel
Vasconcelos, Rodrigo Nogueira
Cambui, Elaine Cristina Barbosa
Araújo, Marcio Luis Valença
Saba, Hugo
Costa, Diego Pereira
Duverger, Soltan Galano
Oliveira, Matheus Teles de
Neto, Hildebrando Simões de Araújo
Franca-Rocha, Washington de Jesus Sant’anna
Jorge, Daniel Cardoso Pereira
de Oliveira, Juliane Fonseca
Andrade, Roberto Fernandes Silva
do Rosário, Rafael Silva
author_sort Miranda, José Garcia Vivas
collection PubMed
description The new Covid-19 pandemic has left traces of suffering and devastation to individuals of almost all countries worldwide and severe impact on the global economy. Understanding the clinical characteristics, interactions with the environment, and the variables that favor or hinder its dissemination help the public authorities in the fight and prevention, leading for a rapid response in society. Using models to estimate contamination scenarios in real time plays an important role. Population compartments models based on ordinary differential equations (ODE) for a given region assume two homogeneous premises, the contact mechanisms and diffusion rates, disregarding heterogeneous factors as different contact rates for each municipality and the flow of contaminated people among them. This work considers a hybrid model for covid-19, based on local SIR models and the population flow network among municipalities, responsible for a complex lag dynamic in their contagion curves. Based on actual infection data, local contact rates ([Formula: see text]) are evaluated. The epidemic evolution at each municipality depends on the local SIR parameters and on the inter-municipality transport flow. When heterogeneity of [Formula: see text] values and flow network are included, forecasts differ from those of the homogeneous ODE model. This effect is more relevant when more municipalities are considered, hinting that the latter overestimates new cases. In addition, mitigation scenarios are assessed to evaluate the effect of earlier interventions reducing the inter-municipality flux. Restricting the flow between municipalities in the initial stage of the epidemic is fundamental for flattening the contamination curve, highlighting advantages of a contamination lag between the capital curve and those of other municipalities in the territories.
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spelling pubmed-76415802020-11-05 Scaling effect in COVID-19 spreading: The role of heterogeneity in a hybrid ODE-network model with restrictions on the inter-cities flow Miranda, José Garcia Vivas Silva, Mateus Souza Bertolino, José Gabriel Vasconcelos, Rodrigo Nogueira Cambui, Elaine Cristina Barbosa Araújo, Marcio Luis Valença Saba, Hugo Costa, Diego Pereira Duverger, Soltan Galano Oliveira, Matheus Teles de Neto, Hildebrando Simões de Araújo Franca-Rocha, Washington de Jesus Sant’anna Jorge, Daniel Cardoso Pereira de Oliveira, Juliane Fonseca Andrade, Roberto Fernandes Silva do Rosário, Rafael Silva Physica D Article The new Covid-19 pandemic has left traces of suffering and devastation to individuals of almost all countries worldwide and severe impact on the global economy. Understanding the clinical characteristics, interactions with the environment, and the variables that favor or hinder its dissemination help the public authorities in the fight and prevention, leading for a rapid response in society. Using models to estimate contamination scenarios in real time plays an important role. Population compartments models based on ordinary differential equations (ODE) for a given region assume two homogeneous premises, the contact mechanisms and diffusion rates, disregarding heterogeneous factors as different contact rates for each municipality and the flow of contaminated people among them. This work considers a hybrid model for covid-19, based on local SIR models and the population flow network among municipalities, responsible for a complex lag dynamic in their contagion curves. Based on actual infection data, local contact rates ([Formula: see text]) are evaluated. The epidemic evolution at each municipality depends on the local SIR parameters and on the inter-municipality transport flow. When heterogeneity of [Formula: see text] values and flow network are included, forecasts differ from those of the homogeneous ODE model. This effect is more relevant when more municipalities are considered, hinting that the latter overestimates new cases. In addition, mitigation scenarios are assessed to evaluate the effect of earlier interventions reducing the inter-municipality flux. Restricting the flow between municipalities in the initial stage of the epidemic is fundamental for flattening the contamination curve, highlighting advantages of a contamination lag between the capital curve and those of other municipalities in the territories. Elsevier B.V. 2021-01 2020-11-04 /pmc/articles/PMC7641580/ /pubmed/33169041 http://dx.doi.org/10.1016/j.physd.2020.132792 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Miranda, José Garcia Vivas
Silva, Mateus Souza
Bertolino, José Gabriel
Vasconcelos, Rodrigo Nogueira
Cambui, Elaine Cristina Barbosa
Araújo, Marcio Luis Valença
Saba, Hugo
Costa, Diego Pereira
Duverger, Soltan Galano
Oliveira, Matheus Teles de
Neto, Hildebrando Simões de Araújo
Franca-Rocha, Washington de Jesus Sant’anna
Jorge, Daniel Cardoso Pereira
de Oliveira, Juliane Fonseca
Andrade, Roberto Fernandes Silva
do Rosário, Rafael Silva
Scaling effect in COVID-19 spreading: The role of heterogeneity in a hybrid ODE-network model with restrictions on the inter-cities flow
title Scaling effect in COVID-19 spreading: The role of heterogeneity in a hybrid ODE-network model with restrictions on the inter-cities flow
title_full Scaling effect in COVID-19 spreading: The role of heterogeneity in a hybrid ODE-network model with restrictions on the inter-cities flow
title_fullStr Scaling effect in COVID-19 spreading: The role of heterogeneity in a hybrid ODE-network model with restrictions on the inter-cities flow
title_full_unstemmed Scaling effect in COVID-19 spreading: The role of heterogeneity in a hybrid ODE-network model with restrictions on the inter-cities flow
title_short Scaling effect in COVID-19 spreading: The role of heterogeneity in a hybrid ODE-network model with restrictions on the inter-cities flow
title_sort scaling effect in covid-19 spreading: the role of heterogeneity in a hybrid ode-network model with restrictions on the inter-cities flow
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7641580/
https://www.ncbi.nlm.nih.gov/pubmed/33169041
http://dx.doi.org/10.1016/j.physd.2020.132792
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