Cargando…

Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta

Comparative studies of insect genome size show that Orthoptera is a unique group of Insecta with a significantly enlarged genome. To determine a suitable internal standard for a large genome and to compare the effects of different internal standards on estimates of genome size, we used four internal...

Descripción completa

Detalles Bibliográficos
Autores principales: Mao, Ying, Zhang, Nan, Nie, Yimeng, Zhang, Xue, Li, Xuejuan, Huang, Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7642767/
https://www.ncbi.nlm.nih.gov/pubmed/33192564
http://dx.doi.org/10.3389/fphys.2020.567125
_version_ 1783606147363635200
author Mao, Ying
Zhang, Nan
Nie, Yimeng
Zhang, Xue
Li, Xuejuan
Huang, Yuan
author_facet Mao, Ying
Zhang, Nan
Nie, Yimeng
Zhang, Xue
Li, Xuejuan
Huang, Yuan
author_sort Mao, Ying
collection PubMed
description Comparative studies of insect genome size show that Orthoptera is a unique group of Insecta with a significantly enlarged genome. To determine a suitable internal standard for a large genome and to compare the effects of different internal standards on estimates of genome size, we used four internal standards to estimate nuclear DNA content in nine insect species with large genomes. The results showed that the combination of two internal standards, Locusta migratoria (♂1C = 6.20 pg, ♀1C = 6.60 pg) and Periplaneta americana♂ (1C = 3.41 pg), was suitable for estimating large genome of Caelifera by flow cytometry. Using these two internal standards, we estimated the genome sizes of 17 species of Caelifera (12 genera in Acrididae, 2 genera in Pamphagidae, 1 genus in Pyrgomorphidae) using flow cytometry. Genomes ranged from 6.57 pg (Shirakiacris shirakii) to 18.64 pg (Bryodemella holdereri), the largest described in insects to date. These species showed significant genomic dimorphism based on sex: females had a 0.56 pg larger genome than males on average, which might be due to the sex chromosome determinism mechanism of X0(♂)/XX(♀). To test the results obtained by flow cytometry, we used k-mers of Illumina sequencing data to gauge the C-value of Calliptamus abbreviatus and Haplotropis brunneriana. The results of the two methods are slightly different. Genomes were estimated to be about 0.28 and 0.26 pg smaller, respectively, than the flow cytometry values. Furthermore, we also reconstructed the evolutionary relationships of these taxa and discuss the genome size evolution in a phylogenetic framework.
format Online
Article
Text
id pubmed-7642767
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-76427672020-11-13 Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta Mao, Ying Zhang, Nan Nie, Yimeng Zhang, Xue Li, Xuejuan Huang, Yuan Front Physiol Physiology Comparative studies of insect genome size show that Orthoptera is a unique group of Insecta with a significantly enlarged genome. To determine a suitable internal standard for a large genome and to compare the effects of different internal standards on estimates of genome size, we used four internal standards to estimate nuclear DNA content in nine insect species with large genomes. The results showed that the combination of two internal standards, Locusta migratoria (♂1C = 6.20 pg, ♀1C = 6.60 pg) and Periplaneta americana♂ (1C = 3.41 pg), was suitable for estimating large genome of Caelifera by flow cytometry. Using these two internal standards, we estimated the genome sizes of 17 species of Caelifera (12 genera in Acrididae, 2 genera in Pamphagidae, 1 genus in Pyrgomorphidae) using flow cytometry. Genomes ranged from 6.57 pg (Shirakiacris shirakii) to 18.64 pg (Bryodemella holdereri), the largest described in insects to date. These species showed significant genomic dimorphism based on sex: females had a 0.56 pg larger genome than males on average, which might be due to the sex chromosome determinism mechanism of X0(♂)/XX(♀). To test the results obtained by flow cytometry, we used k-mers of Illumina sequencing data to gauge the C-value of Calliptamus abbreviatus and Haplotropis brunneriana. The results of the two methods are slightly different. Genomes were estimated to be about 0.28 and 0.26 pg smaller, respectively, than the flow cytometry values. Furthermore, we also reconstructed the evolutionary relationships of these taxa and discuss the genome size evolution in a phylogenetic framework. Frontiers Media S.A. 2020-10-22 /pmc/articles/PMC7642767/ /pubmed/33192564 http://dx.doi.org/10.3389/fphys.2020.567125 Text en Copyright © 2020 Mao, Zhang, Nie, Zhang, Li and Huang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Mao, Ying
Zhang, Nan
Nie, Yimeng
Zhang, Xue
Li, Xuejuan
Huang, Yuan
Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta
title Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta
title_full Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta
title_fullStr Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta
title_full_unstemmed Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta
title_short Genome Size of 17 Species From Caelifera (Orthoptera) and Determination of Internal Standards With Very Large Genome Size in Insecta
title_sort genome size of 17 species from caelifera (orthoptera) and determination of internal standards with very large genome size in insecta
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7642767/
https://www.ncbi.nlm.nih.gov/pubmed/33192564
http://dx.doi.org/10.3389/fphys.2020.567125
work_keys_str_mv AT maoying genomesizeof17speciesfromcaeliferaorthopteraanddeterminationofinternalstandardswithverylargegenomesizeininsecta
AT zhangnan genomesizeof17speciesfromcaeliferaorthopteraanddeterminationofinternalstandardswithverylargegenomesizeininsecta
AT nieyimeng genomesizeof17speciesfromcaeliferaorthopteraanddeterminationofinternalstandardswithverylargegenomesizeininsecta
AT zhangxue genomesizeof17speciesfromcaeliferaorthopteraanddeterminationofinternalstandardswithverylargegenomesizeininsecta
AT lixuejuan genomesizeof17speciesfromcaeliferaorthopteraanddeterminationofinternalstandardswithverylargegenomesizeininsecta
AT huangyuan genomesizeof17speciesfromcaeliferaorthopteraanddeterminationofinternalstandardswithverylargegenomesizeininsecta