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Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and molecular docking of N-{3-[(4-methoxyphenyl)carbamoyl]phenyl}-3-nitrobenzamide as a promising inhibitor of hfXa
The title compound, C(21)H(17)N(3)O(5), consists of three rings, A, B and C, linked by amide bonds with the benzene rings A and C being inclined to the mean plane of the central benzene ring B by 2.99 (18) and 4.57 (18)°, respectively. In the crystal, molecules are linked via N—H⋯O and C—H⋯O hydrog...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7643242/ https://www.ncbi.nlm.nih.gov/pubmed/33209349 http://dx.doi.org/10.1107/S2056989020013730 |
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author | Moreno-Fuquen, Rodolfo Hurtado-Angulo, Mario Arango-Daraviña, Kevin Bain, Gavin Kennedy, Alan R. |
author_facet | Moreno-Fuquen, Rodolfo Hurtado-Angulo, Mario Arango-Daraviña, Kevin Bain, Gavin Kennedy, Alan R. |
author_sort | Moreno-Fuquen, Rodolfo |
collection | PubMed |
description | The title compound, C(21)H(17)N(3)O(5), consists of three rings, A, B and C, linked by amide bonds with the benzene rings A and C being inclined to the mean plane of the central benzene ring B by 2.99 (18) and 4.57 (18)°, respectively. In the crystal, molecules are linked via N—H⋯O and C—H⋯O hydrogen bonds, forming fused R (2) (2)(18), R (3) (4)(30), R (4) (4)(38) rings running along [[Image: see text]0[Image: see text]] and R (3) (3)(37) and R (3) (3)(15) rings along [001]. Hirshfeld analysis was undertaken to study the intermolecular contacts in the crystal, showing that the most significant contacts are H⋯O/O⋯H (30.5%), H⋯C/C⋯H (28.2%) and H⋯H (29.0%). Two zones with positive (50.98 and 42.92 kcal mol(−1)) potentials and two zones with negative (−42.22 and −34.63 kcal mol(−1)) potentials promote the N—H⋯O interactions in the crystal. An evaluation of the molecular coupling of the title compound and the protein with enzymatic properties known as human coagulation factor Xa (hfXa) showed the potential for coupling in three arrangements with a similar minimum binding energy, which differs by approximately 3 kcal mol(−1) from the value for the molecule Apixaban, which was used as a positive control inhibitor. This suggests the title compound exhibits inhibitory activity. |
format | Online Article Text |
id | pubmed-7643242 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-76432422020-11-17 Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and molecular docking of N-{3-[(4-methoxyphenyl)carbamoyl]phenyl}-3-nitrobenzamide as a promising inhibitor of hfXa Moreno-Fuquen, Rodolfo Hurtado-Angulo, Mario Arango-Daraviña, Kevin Bain, Gavin Kennedy, Alan R. Acta Crystallogr E Crystallogr Commun Research Communications The title compound, C(21)H(17)N(3)O(5), consists of three rings, A, B and C, linked by amide bonds with the benzene rings A and C being inclined to the mean plane of the central benzene ring B by 2.99 (18) and 4.57 (18)°, respectively. In the crystal, molecules are linked via N—H⋯O and C—H⋯O hydrogen bonds, forming fused R (2) (2)(18), R (3) (4)(30), R (4) (4)(38) rings running along [[Image: see text]0[Image: see text]] and R (3) (3)(37) and R (3) (3)(15) rings along [001]. Hirshfeld analysis was undertaken to study the intermolecular contacts in the crystal, showing that the most significant contacts are H⋯O/O⋯H (30.5%), H⋯C/C⋯H (28.2%) and H⋯H (29.0%). Two zones with positive (50.98 and 42.92 kcal mol(−1)) potentials and two zones with negative (−42.22 and −34.63 kcal mol(−1)) potentials promote the N—H⋯O interactions in the crystal. An evaluation of the molecular coupling of the title compound and the protein with enzymatic properties known as human coagulation factor Xa (hfXa) showed the potential for coupling in three arrangements with a similar minimum binding energy, which differs by approximately 3 kcal mol(−1) from the value for the molecule Apixaban, which was used as a positive control inhibitor. This suggests the title compound exhibits inhibitory activity. International Union of Crystallography 2020-10-20 /pmc/articles/PMC7643242/ /pubmed/33209349 http://dx.doi.org/10.1107/S2056989020013730 Text en © Moreno-Fuquen et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Moreno-Fuquen, Rodolfo Hurtado-Angulo, Mario Arango-Daraviña, Kevin Bain, Gavin Kennedy, Alan R. Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and molecular docking of N-{3-[(4-methoxyphenyl)carbamoyl]phenyl}-3-nitrobenzamide as a promising inhibitor of hfXa |
title | Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and molecular docking of N-{3-[(4-methoxyphenyl)carbamoyl]phenyl}-3-nitrobenzamide as a promising inhibitor of hfXa |
title_full | Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and molecular docking of N-{3-[(4-methoxyphenyl)carbamoyl]phenyl}-3-nitrobenzamide as a promising inhibitor of hfXa |
title_fullStr | Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and molecular docking of N-{3-[(4-methoxyphenyl)carbamoyl]phenyl}-3-nitrobenzamide as a promising inhibitor of hfXa |
title_full_unstemmed | Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and molecular docking of N-{3-[(4-methoxyphenyl)carbamoyl]phenyl}-3-nitrobenzamide as a promising inhibitor of hfXa |
title_short | Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and molecular docking of N-{3-[(4-methoxyphenyl)carbamoyl]phenyl}-3-nitrobenzamide as a promising inhibitor of hfXa |
title_sort | synthesis, crystal structure, hirshfeld surface analysis, mep study and molecular docking of n-{3-[(4-methoxyphenyl)carbamoyl]phenyl}-3-nitrobenzamide as a promising inhibitor of hfxa |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7643242/ https://www.ncbi.nlm.nih.gov/pubmed/33209349 http://dx.doi.org/10.1107/S2056989020013730 |
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