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Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and mol­ecular docking of N-{3-[(4-meth­oxy­phen­yl)carbamo­yl]phen­yl}-3-nitro­benzamide as a promising inhibitor of hfXa

The title compound, C(21)H(17)N(3)O(5), consists of three rings, A, B and C, linked by amide bonds with the benzene rings A and C being inclined to the mean plane of the central benzene ring B by 2.99 (18) and 4.57 (18)°, respectively. In the crystal, mol­ecules are linked via N—H⋯O and C—H⋯O hydrog...

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Autores principales: Moreno-Fuquen, Rodolfo, Hurtado-Angulo, Mario, Arango-Daraviña, Kevin, Bain, Gavin, Kennedy, Alan R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7643242/
https://www.ncbi.nlm.nih.gov/pubmed/33209349
http://dx.doi.org/10.1107/S2056989020013730
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author Moreno-Fuquen, Rodolfo
Hurtado-Angulo, Mario
Arango-Daraviña, Kevin
Bain, Gavin
Kennedy, Alan R.
author_facet Moreno-Fuquen, Rodolfo
Hurtado-Angulo, Mario
Arango-Daraviña, Kevin
Bain, Gavin
Kennedy, Alan R.
author_sort Moreno-Fuquen, Rodolfo
collection PubMed
description The title compound, C(21)H(17)N(3)O(5), consists of three rings, A, B and C, linked by amide bonds with the benzene rings A and C being inclined to the mean plane of the central benzene ring B by 2.99 (18) and 4.57 (18)°, respectively. In the crystal, mol­ecules are linked via N—H⋯O and C—H⋯O hydrogen bonds, forming fused R (2) (2)(18), R (3) (4)(30), R (4) (4)(38) rings running along [[Image: see text]0[Image: see text]] and R (3) (3)(37) and R (3) (3)(15) rings along [001]. Hirshfeld analysis was undertaken to study the inter­molecular contacts in the crystal, showing that the most significant contacts are H⋯O/O⋯H (30.5%), H⋯C/C⋯H (28.2%) and H⋯H (29.0%). Two zones with positive (50.98 and 42.92 kcal mol(−1)) potentials and two zones with negative (−42.22 and −34.63 kcal mol(−1)) potentials promote the N—H⋯O inter­actions in the crystal. An evaluation of the mol­ecular coupling of the title compound and the protein with enzymatic properties known as human coagulation factor Xa (hfXa) showed the potential for coupling in three arrangements with a similar minimum binding energy, which differs by approximately 3 kcal mol(−1) from the value for the mol­ecule Apixaban, which was used as a positive control inhibitor. This suggests the title compound exhibits inhibitory activity.
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spelling pubmed-76432422020-11-17 Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and mol­ecular docking of N-{3-[(4-meth­oxy­phen­yl)carbamo­yl]phen­yl}-3-nitro­benzamide as a promising inhibitor of hfXa Moreno-Fuquen, Rodolfo Hurtado-Angulo, Mario Arango-Daraviña, Kevin Bain, Gavin Kennedy, Alan R. Acta Crystallogr E Crystallogr Commun Research Communications The title compound, C(21)H(17)N(3)O(5), consists of three rings, A, B and C, linked by amide bonds with the benzene rings A and C being inclined to the mean plane of the central benzene ring B by 2.99 (18) and 4.57 (18)°, respectively. In the crystal, mol­ecules are linked via N—H⋯O and C—H⋯O hydrogen bonds, forming fused R (2) (2)(18), R (3) (4)(30), R (4) (4)(38) rings running along [[Image: see text]0[Image: see text]] and R (3) (3)(37) and R (3) (3)(15) rings along [001]. Hirshfeld analysis was undertaken to study the inter­molecular contacts in the crystal, showing that the most significant contacts are H⋯O/O⋯H (30.5%), H⋯C/C⋯H (28.2%) and H⋯H (29.0%). Two zones with positive (50.98 and 42.92 kcal mol(−1)) potentials and two zones with negative (−42.22 and −34.63 kcal mol(−1)) potentials promote the N—H⋯O inter­actions in the crystal. An evaluation of the mol­ecular coupling of the title compound and the protein with enzymatic properties known as human coagulation factor Xa (hfXa) showed the potential for coupling in three arrangements with a similar minimum binding energy, which differs by approximately 3 kcal mol(−1) from the value for the mol­ecule Apixaban, which was used as a positive control inhibitor. This suggests the title compound exhibits inhibitory activity. International Union of Crystallography 2020-10-20 /pmc/articles/PMC7643242/ /pubmed/33209349 http://dx.doi.org/10.1107/S2056989020013730 Text en © Moreno-Fuquen et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Communications
Moreno-Fuquen, Rodolfo
Hurtado-Angulo, Mario
Arango-Daraviña, Kevin
Bain, Gavin
Kennedy, Alan R.
Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and mol­ecular docking of N-{3-[(4-meth­oxy­phen­yl)carbamo­yl]phen­yl}-3-nitro­benzamide as a promising inhibitor of hfXa
title Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and mol­ecular docking of N-{3-[(4-meth­oxy­phen­yl)carbamo­yl]phen­yl}-3-nitro­benzamide as a promising inhibitor of hfXa
title_full Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and mol­ecular docking of N-{3-[(4-meth­oxy­phen­yl)carbamo­yl]phen­yl}-3-nitro­benzamide as a promising inhibitor of hfXa
title_fullStr Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and mol­ecular docking of N-{3-[(4-meth­oxy­phen­yl)carbamo­yl]phen­yl}-3-nitro­benzamide as a promising inhibitor of hfXa
title_full_unstemmed Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and mol­ecular docking of N-{3-[(4-meth­oxy­phen­yl)carbamo­yl]phen­yl}-3-nitro­benzamide as a promising inhibitor of hfXa
title_short Synthesis, crystal structure, Hirshfeld surface analysis, MEP study and mol­ecular docking of N-{3-[(4-meth­oxy­phen­yl)carbamo­yl]phen­yl}-3-nitro­benzamide as a promising inhibitor of hfXa
title_sort synthesis, crystal structure, hirshfeld surface analysis, mep study and mol­ecular docking of n-{3-[(4-meth­oxy­phen­yl)carbamo­yl]phen­yl}-3-nitro­benzamide as a promising inhibitor of hfxa
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7643242/
https://www.ncbi.nlm.nih.gov/pubmed/33209349
http://dx.doi.org/10.1107/S2056989020013730
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