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Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships

Luffa acutangula and Luffa aegyptiaca are domesticated plants in the family Cucurbitaceae. They are mainly cultivated in the tropical and subtropical regions of Asia. The chloroplast genomes of many Cucurbitaceae species were sequenced to examine gene content and evolution. However, the chloroplast...

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Autores principales: Yundaeng, Chutintorn, Nawae, Wanapinun, Naktang, Chaiwat, Shearman, Jeremy R., Sonthirod, Chutima, Sangsrakru, Duangjai, Yoocha, Thippawan, Jomchai, Nukoon, Sheedy, John R., Mekiyanon, Supat, Tuntaisong, Methawat, Pootakham, Wirulda, Tangphatsornruang, Sithichoke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7644877/
https://www.ncbi.nlm.nih.gov/pubmed/33195780
http://dx.doi.org/10.1016/j.dib.2020.106470
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author Yundaeng, Chutintorn
Nawae, Wanapinun
Naktang, Chaiwat
Shearman, Jeremy R.
Sonthirod, Chutima
Sangsrakru, Duangjai
Yoocha, Thippawan
Jomchai, Nukoon
Sheedy, John R.
Mekiyanon, Supat
Tuntaisong, Methawat
Pootakham, Wirulda
Tangphatsornruang, Sithichoke
author_facet Yundaeng, Chutintorn
Nawae, Wanapinun
Naktang, Chaiwat
Shearman, Jeremy R.
Sonthirod, Chutima
Sangsrakru, Duangjai
Yoocha, Thippawan
Jomchai, Nukoon
Sheedy, John R.
Mekiyanon, Supat
Tuntaisong, Methawat
Pootakham, Wirulda
Tangphatsornruang, Sithichoke
author_sort Yundaeng, Chutintorn
collection PubMed
description Luffa acutangula and Luffa aegyptiaca are domesticated plants in the family Cucurbitaceae. They are mainly cultivated in the tropical and subtropical regions of Asia. The chloroplast genomes of many Cucurbitaceae species were sequenced to examine gene content and evolution. However, the chloroplast genome sequences of L. acutangula and L. aegyptiaca have not been reported. We report the first complete sequences of L. acutangula and L. aegyptiaca chloroplast genomes obtained from Pacific Biosciences sequencing and use them to infer evolutionary relationships. The chloroplast genomes of L. acutangula and L. aegyptiaca are 157,202 and 157,275 bp, respectively. Both genomes possessed the typical quadripartite structure and contained 131 genes, including 87 coding genes, 36 tRNA genes and 8 rRNA genes. We identified simple sequence repeats (SSR) and single nucleotide polymorphisms (SNP) from both chloroplast genomes. Polycistronic mRNA was examined in L. acutangula and L. aegyptiaca using RNA sequences from Isoform sequencing to identify co-transcribed genes. IR size and locations were compared to other species and found to be relatively unchanged. Phylogenetic analysis confirmed the close relationship between L. acutangula and L. aegyptiaca in the Cucurbitaceae lineage and showed separation of the Luffa monophyletic clade from other species in the subtribe Sicyocae. The results obtained from this study can be useful for studying the evolution of Cucurbitaceae plants.
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spelling pubmed-76448772020-11-13 Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships Yundaeng, Chutintorn Nawae, Wanapinun Naktang, Chaiwat Shearman, Jeremy R. Sonthirod, Chutima Sangsrakru, Duangjai Yoocha, Thippawan Jomchai, Nukoon Sheedy, John R. Mekiyanon, Supat Tuntaisong, Methawat Pootakham, Wirulda Tangphatsornruang, Sithichoke Data Brief Data Article Luffa acutangula and Luffa aegyptiaca are domesticated plants in the family Cucurbitaceae. They are mainly cultivated in the tropical and subtropical regions of Asia. The chloroplast genomes of many Cucurbitaceae species were sequenced to examine gene content and evolution. However, the chloroplast genome sequences of L. acutangula and L. aegyptiaca have not been reported. We report the first complete sequences of L. acutangula and L. aegyptiaca chloroplast genomes obtained from Pacific Biosciences sequencing and use them to infer evolutionary relationships. The chloroplast genomes of L. acutangula and L. aegyptiaca are 157,202 and 157,275 bp, respectively. Both genomes possessed the typical quadripartite structure and contained 131 genes, including 87 coding genes, 36 tRNA genes and 8 rRNA genes. We identified simple sequence repeats (SSR) and single nucleotide polymorphisms (SNP) from both chloroplast genomes. Polycistronic mRNA was examined in L. acutangula and L. aegyptiaca using RNA sequences from Isoform sequencing to identify co-transcribed genes. IR size and locations were compared to other species and found to be relatively unchanged. Phylogenetic analysis confirmed the close relationship between L. acutangula and L. aegyptiaca in the Cucurbitaceae lineage and showed separation of the Luffa monophyletic clade from other species in the subtribe Sicyocae. The results obtained from this study can be useful for studying the evolution of Cucurbitaceae plants. Elsevier 2020-10-28 /pmc/articles/PMC7644877/ /pubmed/33195780 http://dx.doi.org/10.1016/j.dib.2020.106470 Text en © 2020 The Author(s). Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Yundaeng, Chutintorn
Nawae, Wanapinun
Naktang, Chaiwat
Shearman, Jeremy R.
Sonthirod, Chutima
Sangsrakru, Duangjai
Yoocha, Thippawan
Jomchai, Nukoon
Sheedy, John R.
Mekiyanon, Supat
Tuntaisong, Methawat
Pootakham, Wirulda
Tangphatsornruang, Sithichoke
Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships
title Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships
title_full Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships
title_fullStr Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships
title_full_unstemmed Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships
title_short Chloroplast genome data of Luffa acutangula and Luffa aegyptiaca and their phylogenetic relationships
title_sort chloroplast genome data of luffa acutangula and luffa aegyptiaca and their phylogenetic relationships
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7644877/
https://www.ncbi.nlm.nih.gov/pubmed/33195780
http://dx.doi.org/10.1016/j.dib.2020.106470
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