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Development and Validation of the Predictive Model for Esophageal Squamous Cell Carcinoma Differentiation Degree
The diagnosis of the degree of differentiation of tumor cells can help physicians to make timely detection and take appropriate treatment for the patient's condition. In this study, the original dataset is clustered into two independent types by the Kohonen clustering algorithm. One type is use...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645151/ https://www.ncbi.nlm.nih.gov/pubmed/33193745 http://dx.doi.org/10.3389/fgene.2020.595638 |
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author | Wang, Yanfeng Yang, Yuli Sun, Junwei Wang, Lidong Song, Xin Zhao, Xueke |
author_facet | Wang, Yanfeng Yang, Yuli Sun, Junwei Wang, Lidong Song, Xin Zhao, Xueke |
author_sort | Wang, Yanfeng |
collection | PubMed |
description | The diagnosis of the degree of differentiation of tumor cells can help physicians to make timely detection and take appropriate treatment for the patient's condition. In this study, the original dataset is clustered into two independent types by the Kohonen clustering algorithm. One type is used as the development sets to find correlation indicators and establish predictive models of differentiation, while the other type is used as the validation sets to test the correlation indicators and models. In the development sets, thirteen indicators significantly associated with the degree of differentiation of esophageal squamous cell carcinoma are found by the Kohonen clustering algorithm. Thirteen relevant indicators are used as input features and the degree of tumor differentiations is used as output. Ten classification algorithms are used to predict the differentiation of esophageal squamous cell carcinoma. Artificial bee colony-support vector machine (ABC-SVM) predicts better than the other nine algorithms, with an average accuracy of 81.5% for the 10-fold cross-validation. Based on logistic regression and ReliefF algorithm, five models with the greater merit for the degree of differentiation are found in the development sets. The AUC values of the five models are 0.672, 0.628, 0.630, 0.628, and 0.608 (P < 0.05). The AUC values of the five models in the validation sets are 0.753, 0.728, 0.744, 0.776, and 0.868 (P < 0.0001). The predicted values of the five models are constructed as the input features of ABC-SVM. The accuracy of the 10-fold cross-validation reached 82.0 and 86.5% in the development sets and the validation sets, respectively. |
format | Online Article Text |
id | pubmed-7645151 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-76451512020-11-13 Development and Validation of the Predictive Model for Esophageal Squamous Cell Carcinoma Differentiation Degree Wang, Yanfeng Yang, Yuli Sun, Junwei Wang, Lidong Song, Xin Zhao, Xueke Front Genet Genetics The diagnosis of the degree of differentiation of tumor cells can help physicians to make timely detection and take appropriate treatment for the patient's condition. In this study, the original dataset is clustered into two independent types by the Kohonen clustering algorithm. One type is used as the development sets to find correlation indicators and establish predictive models of differentiation, while the other type is used as the validation sets to test the correlation indicators and models. In the development sets, thirteen indicators significantly associated with the degree of differentiation of esophageal squamous cell carcinoma are found by the Kohonen clustering algorithm. Thirteen relevant indicators are used as input features and the degree of tumor differentiations is used as output. Ten classification algorithms are used to predict the differentiation of esophageal squamous cell carcinoma. Artificial bee colony-support vector machine (ABC-SVM) predicts better than the other nine algorithms, with an average accuracy of 81.5% for the 10-fold cross-validation. Based on logistic regression and ReliefF algorithm, five models with the greater merit for the degree of differentiation are found in the development sets. The AUC values of the five models are 0.672, 0.628, 0.630, 0.628, and 0.608 (P < 0.05). The AUC values of the five models in the validation sets are 0.753, 0.728, 0.744, 0.776, and 0.868 (P < 0.0001). The predicted values of the five models are constructed as the input features of ABC-SVM. The accuracy of the 10-fold cross-validation reached 82.0 and 86.5% in the development sets and the validation sets, respectively. Frontiers Media S.A. 2020-10-23 /pmc/articles/PMC7645151/ /pubmed/33193745 http://dx.doi.org/10.3389/fgene.2020.595638 Text en Copyright © 2020 Wang, Yang, Sun, Wang, Song and Zhao. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Wang, Yanfeng Yang, Yuli Sun, Junwei Wang, Lidong Song, Xin Zhao, Xueke Development and Validation of the Predictive Model for Esophageal Squamous Cell Carcinoma Differentiation Degree |
title | Development and Validation of the Predictive Model for Esophageal Squamous Cell Carcinoma Differentiation Degree |
title_full | Development and Validation of the Predictive Model for Esophageal Squamous Cell Carcinoma Differentiation Degree |
title_fullStr | Development and Validation of the Predictive Model for Esophageal Squamous Cell Carcinoma Differentiation Degree |
title_full_unstemmed | Development and Validation of the Predictive Model for Esophageal Squamous Cell Carcinoma Differentiation Degree |
title_short | Development and Validation of the Predictive Model for Esophageal Squamous Cell Carcinoma Differentiation Degree |
title_sort | development and validation of the predictive model for esophageal squamous cell carcinoma differentiation degree |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645151/ https://www.ncbi.nlm.nih.gov/pubmed/33193745 http://dx.doi.org/10.3389/fgene.2020.595638 |
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