Cargando…
Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma
Background: Most colon adenocarcinoma (COAD) patients die of distant metastasis, though there are some therapies for metastatic COAD. However, the genes exclusively expressed in metastatic COAD remain unclear. This study aims to identify prognosis-related genes associated with distant metastasis and...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645237/ https://www.ncbi.nlm.nih.gov/pubmed/33194689 http://dx.doi.org/10.3389/fonc.2020.576615 |
_version_ | 1783606614774775808 |
---|---|
author | Wu, Miaowei Lou, Weiyang Lou, Meng Fu, Peifen Yu, Xiao-Fang |
author_facet | Wu, Miaowei Lou, Weiyang Lou, Meng Fu, Peifen Yu, Xiao-Fang |
author_sort | Wu, Miaowei |
collection | PubMed |
description | Background: Most colon adenocarcinoma (COAD) patients die of distant metastasis, though there are some therapies for metastatic COAD. However, the genes exclusively expressed in metastatic COAD remain unclear. This study aims to identify prognosis-related genes associated with distant metastasis and develop therapeutic strategies for COAD patients. Methods: Transcriptomic data from The Cancer Genome Atlas (TCGA; n = 514) cohort were analyzed as a discovery dataset. Next, the data from the GEPIA database and PROGgeneV2 database were used to validate our analysis. Key genes were identified based on the differential miRNA and mRNA expression with respect to M stage. The potential drugs targeting candidate differentially expressed genes (DEGs) were also investigated. Results: A total of 127 significantly DEGs in patients with distant metastasis compared with patients without distant metastasis were identified. Then, four prognosis-related genes (LEP, DLX2, CLSTN2, and REG3A) were selected based on clustering analysis and survival analysis. Finally, three compounds targeting the candidate DEGs, including ajmaline, TTNPB, and dydrogesterone, were predicted to be potential drugs for COAD. Conclusions: This study revealed that distant metastasis in COAD is associated with a specific group of genes, and three existing drugs may suppress the distant metastasis of COAD. |
format | Online Article Text |
id | pubmed-7645237 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-76452372020-11-13 Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma Wu, Miaowei Lou, Weiyang Lou, Meng Fu, Peifen Yu, Xiao-Fang Front Oncol Oncology Background: Most colon adenocarcinoma (COAD) patients die of distant metastasis, though there are some therapies for metastatic COAD. However, the genes exclusively expressed in metastatic COAD remain unclear. This study aims to identify prognosis-related genes associated with distant metastasis and develop therapeutic strategies for COAD patients. Methods: Transcriptomic data from The Cancer Genome Atlas (TCGA; n = 514) cohort were analyzed as a discovery dataset. Next, the data from the GEPIA database and PROGgeneV2 database were used to validate our analysis. Key genes were identified based on the differential miRNA and mRNA expression with respect to M stage. The potential drugs targeting candidate differentially expressed genes (DEGs) were also investigated. Results: A total of 127 significantly DEGs in patients with distant metastasis compared with patients without distant metastasis were identified. Then, four prognosis-related genes (LEP, DLX2, CLSTN2, and REG3A) were selected based on clustering analysis and survival analysis. Finally, three compounds targeting the candidate DEGs, including ajmaline, TTNPB, and dydrogesterone, were predicted to be potential drugs for COAD. Conclusions: This study revealed that distant metastasis in COAD is associated with a specific group of genes, and three existing drugs may suppress the distant metastasis of COAD. Frontiers Media S.A. 2020-10-23 /pmc/articles/PMC7645237/ /pubmed/33194689 http://dx.doi.org/10.3389/fonc.2020.576615 Text en Copyright © 2020 Wu, Lou, Lou, Fu and Yu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Wu, Miaowei Lou, Weiyang Lou, Meng Fu, Peifen Yu, Xiao-Fang Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma |
title | Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma |
title_full | Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma |
title_fullStr | Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma |
title_full_unstemmed | Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma |
title_short | Integrated Analysis of Distant Metastasis-Associated Genes and Potential Drugs in Colon Adenocarcinoma |
title_sort | integrated analysis of distant metastasis-associated genes and potential drugs in colon adenocarcinoma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645237/ https://www.ncbi.nlm.nih.gov/pubmed/33194689 http://dx.doi.org/10.3389/fonc.2020.576615 |
work_keys_str_mv | AT wumiaowei integratedanalysisofdistantmetastasisassociatedgenesandpotentialdrugsincolonadenocarcinoma AT louweiyang integratedanalysisofdistantmetastasisassociatedgenesandpotentialdrugsincolonadenocarcinoma AT loumeng integratedanalysisofdistantmetastasisassociatedgenesandpotentialdrugsincolonadenocarcinoma AT fupeifen integratedanalysisofdistantmetastasisassociatedgenesandpotentialdrugsincolonadenocarcinoma AT yuxiaofang integratedanalysisofdistantmetastasisassociatedgenesandpotentialdrugsincolonadenocarcinoma |