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Identification of prognostic immune genes in laryngeal cancer
OBJECTIVE: In this study, we aimed to identify prognostic immune-related genes and establish a prognostic model for laryngeal cancer based on these genes. METHODS: Transcriptome profiles and clinical data of patients with laryngeal cancer were downloaded from The Cancer Genome Atlas database. Integr...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
SAGE Publications
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645519/ https://www.ncbi.nlm.nih.gov/pubmed/33147419 http://dx.doi.org/10.1177/0300060520964662 |
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author | Xiao, Huan Su, Qi-sheng Li, Chao-qian |
author_facet | Xiao, Huan Su, Qi-sheng Li, Chao-qian |
author_sort | Xiao, Huan |
collection | PubMed |
description | OBJECTIVE: In this study, we aimed to identify prognostic immune-related genes and establish a prognostic model for laryngeal cancer based on these genes. METHODS: Transcriptome profiles and clinical data of patients with laryngeal cancer were downloaded from The Cancer Genome Atlas database. Integrated bioinformatics analyses were performed to identify genes associated with prognosis. RESULTS: Thirty prognostic immune-related genes for laryngeal cancer were identified. We constructed a regulatory network of prognosis comprising transcription factors and immune-related genes. Multivariate Cox regression analyses identified 15 immune-related genes in the network that were used to establish the prognostic model. The model exhibited excellent prognostic prediction ability with a high area under the curve value (0.916). The calculated risk score based on expression of the 15 immune-related genes was shown to be an independent prognostic factor for laryngeal cancer. CONCLUSION: We identified prognostic immune-related genes and established a prognostic model for laryngeal cancer, which might help identify novel predictive biomarkers and therapeutic targets of laryngeal cancer. |
format | Online Article Text |
id | pubmed-7645519 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | SAGE Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-76455192020-11-17 Identification of prognostic immune genes in laryngeal cancer Xiao, Huan Su, Qi-sheng Li, Chao-qian J Int Med Res Pre-Clinical Research Report OBJECTIVE: In this study, we aimed to identify prognostic immune-related genes and establish a prognostic model for laryngeal cancer based on these genes. METHODS: Transcriptome profiles and clinical data of patients with laryngeal cancer were downloaded from The Cancer Genome Atlas database. Integrated bioinformatics analyses were performed to identify genes associated with prognosis. RESULTS: Thirty prognostic immune-related genes for laryngeal cancer were identified. We constructed a regulatory network of prognosis comprising transcription factors and immune-related genes. Multivariate Cox regression analyses identified 15 immune-related genes in the network that were used to establish the prognostic model. The model exhibited excellent prognostic prediction ability with a high area under the curve value (0.916). The calculated risk score based on expression of the 15 immune-related genes was shown to be an independent prognostic factor for laryngeal cancer. CONCLUSION: We identified prognostic immune-related genes and established a prognostic model for laryngeal cancer, which might help identify novel predictive biomarkers and therapeutic targets of laryngeal cancer. SAGE Publications 2020-11-04 /pmc/articles/PMC7645519/ /pubmed/33147419 http://dx.doi.org/10.1177/0300060520964662 Text en © The Author(s) 2020 https://creativecommons.org/licenses/by-nc/4.0/ Creative Commons Non Commercial CC BY-NC: This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License (https://creativecommons.org/licenses/by-nc/4.0/) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access pages (https://us.sagepub.com/en-us/nam/open-access-at-sage). |
spellingShingle | Pre-Clinical Research Report Xiao, Huan Su, Qi-sheng Li, Chao-qian Identification of prognostic immune genes in laryngeal cancer |
title | Identification of prognostic immune genes in laryngeal cancer |
title_full | Identification of prognostic immune genes in laryngeal cancer |
title_fullStr | Identification of prognostic immune genes in laryngeal cancer |
title_full_unstemmed | Identification of prognostic immune genes in laryngeal cancer |
title_short | Identification of prognostic immune genes in laryngeal cancer |
title_sort | identification of prognostic immune genes in laryngeal cancer |
topic | Pre-Clinical Research Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645519/ https://www.ncbi.nlm.nih.gov/pubmed/33147419 http://dx.doi.org/10.1177/0300060520964662 |
work_keys_str_mv | AT xiaohuan identificationofprognosticimmunegenesinlaryngealcancer AT suqisheng identificationofprognosticimmunegenesinlaryngealcancer AT lichaoqian identificationofprognosticimmunegenesinlaryngealcancer |