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A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo

Comparisons of mammalian gut microbiota across different environmental conditions shed light on the diversity and composition of gut bacteriome and suggest consequences for human and animal health. Gut bacteriome comparisons across different environments diverge in their results, showing no generali...

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Autores principales: Narat, Victor, Amato, Katherine R., Ranger, Noémie, Salmona, Maud, Mercier-Delarue, Séverine, Rupp, Stephanie, Ambata, Philippe, Njouom, Richard, Simon, François, Giles-Vernick, Tamara, LeGoff, Jérôme
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645722/
https://www.ncbi.nlm.nih.gov/pubmed/33154444
http://dx.doi.org/10.1038/s41598-020-75847-3
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author Narat, Victor
Amato, Katherine R.
Ranger, Noémie
Salmona, Maud
Mercier-Delarue, Séverine
Rupp, Stephanie
Ambata, Philippe
Njouom, Richard
Simon, François
Giles-Vernick, Tamara
LeGoff, Jérôme
author_facet Narat, Victor
Amato, Katherine R.
Ranger, Noémie
Salmona, Maud
Mercier-Delarue, Séverine
Rupp, Stephanie
Ambata, Philippe
Njouom, Richard
Simon, François
Giles-Vernick, Tamara
LeGoff, Jérôme
author_sort Narat, Victor
collection PubMed
description Comparisons of mammalian gut microbiota across different environmental conditions shed light on the diversity and composition of gut bacteriome and suggest consequences for human and animal health. Gut bacteriome comparisons across different environments diverge in their results, showing no generalizable patterns linking habitat and dietary degradation with bacterial diversity. The challenge in drawing general conclusions from such studies lies in the broad terms describing diverse habitats (“wild”, “captive”, “pristine”). We conducted 16S ribosomal RNA gene sequencing to characterize intestinal microbiota of free-ranging sympatric chimpanzees and gorillas in southeastern Cameroon and sympatric chimpanzees and gorillas in a European zoo. We conducted participant-observation and semi-structured interviews among people living near these great apes to understand better their feeding habits and habitats. Unexpectedly, bacterial diversity (ASV, Faith PD and Shannon) was higher among zoo gorillas than among those in the Cameroonian forest, but zoo and Cameroonian chimpanzees showed no difference. Phylogeny was a strong driver of species-specific microbial composition. Surprisingly, zoo gorilla microbiota more closely resembled that of zoo chimpanzees than of Cameroonian gorillas. Zoo living conditions and dietary similarities may explain these results. We encourage multidisciplinary approach integrating environmental sampling and anthropological evaluation to characterize better diverse environmental conditions of such investigations.
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spelling pubmed-76457222020-11-06 A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo Narat, Victor Amato, Katherine R. Ranger, Noémie Salmona, Maud Mercier-Delarue, Séverine Rupp, Stephanie Ambata, Philippe Njouom, Richard Simon, François Giles-Vernick, Tamara LeGoff, Jérôme Sci Rep Article Comparisons of mammalian gut microbiota across different environmental conditions shed light on the diversity and composition of gut bacteriome and suggest consequences for human and animal health. Gut bacteriome comparisons across different environments diverge in their results, showing no generalizable patterns linking habitat and dietary degradation with bacterial diversity. The challenge in drawing general conclusions from such studies lies in the broad terms describing diverse habitats (“wild”, “captive”, “pristine”). We conducted 16S ribosomal RNA gene sequencing to characterize intestinal microbiota of free-ranging sympatric chimpanzees and gorillas in southeastern Cameroon and sympatric chimpanzees and gorillas in a European zoo. We conducted participant-observation and semi-structured interviews among people living near these great apes to understand better their feeding habits and habitats. Unexpectedly, bacterial diversity (ASV, Faith PD and Shannon) was higher among zoo gorillas than among those in the Cameroonian forest, but zoo and Cameroonian chimpanzees showed no difference. Phylogeny was a strong driver of species-specific microbial composition. Surprisingly, zoo gorilla microbiota more closely resembled that of zoo chimpanzees than of Cameroonian gorillas. Zoo living conditions and dietary similarities may explain these results. We encourage multidisciplinary approach integrating environmental sampling and anthropological evaluation to characterize better diverse environmental conditions of such investigations. Nature Publishing Group UK 2020-11-05 /pmc/articles/PMC7645722/ /pubmed/33154444 http://dx.doi.org/10.1038/s41598-020-75847-3 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Narat, Victor
Amato, Katherine R.
Ranger, Noémie
Salmona, Maud
Mercier-Delarue, Séverine
Rupp, Stephanie
Ambata, Philippe
Njouom, Richard
Simon, François
Giles-Vernick, Tamara
LeGoff, Jérôme
A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo
title A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo
title_full A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo
title_fullStr A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo
title_full_unstemmed A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo
title_short A multi-disciplinary comparison of great ape gut microbiota in a central African forest and European zoo
title_sort multi-disciplinary comparison of great ape gut microbiota in a central african forest and european zoo
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645722/
https://www.ncbi.nlm.nih.gov/pubmed/33154444
http://dx.doi.org/10.1038/s41598-020-75847-3
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