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Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks
In this study we use undersampled MRI acquisition methods to obtain accelerated 3D mono and biexponential spin–lattice relaxation time in the rotating frame (T(1ρ)) mapping of knee cartilage, reducing the usual long scan time. We compare the accelerated T(1ρ) maps obtained by deep learning-based var...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645759/ https://www.ncbi.nlm.nih.gov/pubmed/33154515 http://dx.doi.org/10.1038/s41598-020-76126-x |
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author | Zibetti, Marcelo V. W. Johnson, Patricia M. Sharafi, Azadeh Hammernik, Kerstin Knoll, Florian Regatte, Ravinder R. |
author_facet | Zibetti, Marcelo V. W. Johnson, Patricia M. Sharafi, Azadeh Hammernik, Kerstin Knoll, Florian Regatte, Ravinder R. |
author_sort | Zibetti, Marcelo V. W. |
collection | PubMed |
description | In this study we use undersampled MRI acquisition methods to obtain accelerated 3D mono and biexponential spin–lattice relaxation time in the rotating frame (T(1ρ)) mapping of knee cartilage, reducing the usual long scan time. We compare the accelerated T(1ρ) maps obtained by deep learning-based variational network (VN) and compressed sensing (CS). Both methods were compared with spatial (S) and spatio-temporal (ST) filters. Complex-valued fitting was used for T(1ρ) parameters estimation. We tested with seven in vivo and six synthetic datasets, with acceleration factors (AF) from 2 to 10. Median normalized absolute deviation (MNAD), analysis of variance (ANOVA), and coefficient of variation (CV) were used for analysis. The methods CS-ST, VN-S, and VN-ST performed well for accelerating monoexponential T(1ρ) mapping, with MNAD around 5% for AF = 2, which increases almost linearly with the AF to an MNAD of 13% for AF = 8, with all methods. For biexponential mapping, the VN-ST was the best method starting with MNAD of 7.4% for AF = 2 and reaching MNAD of 13.1% for AF = 8. The VN was able to produce 3D-T(1ρ) mapping of knee cartilage with lower error than CS. The best results were obtained by VN-ST, improving CS-ST method by nearly 7.5%. |
format | Online Article Text |
id | pubmed-7645759 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-76457592020-11-06 Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks Zibetti, Marcelo V. W. Johnson, Patricia M. Sharafi, Azadeh Hammernik, Kerstin Knoll, Florian Regatte, Ravinder R. Sci Rep Article In this study we use undersampled MRI acquisition methods to obtain accelerated 3D mono and biexponential spin–lattice relaxation time in the rotating frame (T(1ρ)) mapping of knee cartilage, reducing the usual long scan time. We compare the accelerated T(1ρ) maps obtained by deep learning-based variational network (VN) and compressed sensing (CS). Both methods were compared with spatial (S) and spatio-temporal (ST) filters. Complex-valued fitting was used for T(1ρ) parameters estimation. We tested with seven in vivo and six synthetic datasets, with acceleration factors (AF) from 2 to 10. Median normalized absolute deviation (MNAD), analysis of variance (ANOVA), and coefficient of variation (CV) were used for analysis. The methods CS-ST, VN-S, and VN-ST performed well for accelerating monoexponential T(1ρ) mapping, with MNAD around 5% for AF = 2, which increases almost linearly with the AF to an MNAD of 13% for AF = 8, with all methods. For biexponential mapping, the VN-ST was the best method starting with MNAD of 7.4% for AF = 2 and reaching MNAD of 13.1% for AF = 8. The VN was able to produce 3D-T(1ρ) mapping of knee cartilage with lower error than CS. The best results were obtained by VN-ST, improving CS-ST method by nearly 7.5%. Nature Publishing Group UK 2020-11-05 /pmc/articles/PMC7645759/ /pubmed/33154515 http://dx.doi.org/10.1038/s41598-020-76126-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Zibetti, Marcelo V. W. Johnson, Patricia M. Sharafi, Azadeh Hammernik, Kerstin Knoll, Florian Regatte, Ravinder R. Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks |
title | Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks |
title_full | Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks |
title_fullStr | Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks |
title_full_unstemmed | Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks |
title_short | Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks |
title_sort | rapid mono and biexponential 3d-t(1ρ) mapping of knee cartilage using variational networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645759/ https://www.ncbi.nlm.nih.gov/pubmed/33154515 http://dx.doi.org/10.1038/s41598-020-76126-x |
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