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Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks

In this study we use undersampled MRI acquisition methods to obtain accelerated 3D mono and biexponential spin–lattice relaxation time in the rotating frame (T(1ρ)) mapping of knee cartilage, reducing the usual long scan time. We compare the accelerated T(1ρ) maps obtained by deep learning-based var...

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Autores principales: Zibetti, Marcelo V. W., Johnson, Patricia M., Sharafi, Azadeh, Hammernik, Kerstin, Knoll, Florian, Regatte, Ravinder R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645759/
https://www.ncbi.nlm.nih.gov/pubmed/33154515
http://dx.doi.org/10.1038/s41598-020-76126-x
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author Zibetti, Marcelo V. W.
Johnson, Patricia M.
Sharafi, Azadeh
Hammernik, Kerstin
Knoll, Florian
Regatte, Ravinder R.
author_facet Zibetti, Marcelo V. W.
Johnson, Patricia M.
Sharafi, Azadeh
Hammernik, Kerstin
Knoll, Florian
Regatte, Ravinder R.
author_sort Zibetti, Marcelo V. W.
collection PubMed
description In this study we use undersampled MRI acquisition methods to obtain accelerated 3D mono and biexponential spin–lattice relaxation time in the rotating frame (T(1ρ)) mapping of knee cartilage, reducing the usual long scan time. We compare the accelerated T(1ρ) maps obtained by deep learning-based variational network (VN) and compressed sensing (CS). Both methods were compared with spatial (S) and spatio-temporal (ST) filters. Complex-valued fitting was used for T(1ρ) parameters estimation. We tested with seven in vivo and six synthetic datasets, with acceleration factors (AF) from 2 to 10. Median normalized absolute deviation (MNAD), analysis of variance (ANOVA), and coefficient of variation (CV) were used for analysis. The methods CS-ST, VN-S, and VN-ST performed well for accelerating monoexponential T(1ρ) mapping, with MNAD around 5% for AF = 2, which increases almost linearly with the AF to an MNAD of 13% for AF = 8, with all methods. For biexponential mapping, the VN-ST was the best method starting with MNAD of 7.4% for AF = 2 and reaching MNAD of 13.1% for AF = 8. The VN was able to produce 3D-T(1ρ) mapping of knee cartilage with lower error than CS. The best results were obtained by VN-ST, improving CS-ST method by nearly 7.5%.
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spelling pubmed-76457592020-11-06 Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks Zibetti, Marcelo V. W. Johnson, Patricia M. Sharafi, Azadeh Hammernik, Kerstin Knoll, Florian Regatte, Ravinder R. Sci Rep Article In this study we use undersampled MRI acquisition methods to obtain accelerated 3D mono and biexponential spin–lattice relaxation time in the rotating frame (T(1ρ)) mapping of knee cartilage, reducing the usual long scan time. We compare the accelerated T(1ρ) maps obtained by deep learning-based variational network (VN) and compressed sensing (CS). Both methods were compared with spatial (S) and spatio-temporal (ST) filters. Complex-valued fitting was used for T(1ρ) parameters estimation. We tested with seven in vivo and six synthetic datasets, with acceleration factors (AF) from 2 to 10. Median normalized absolute deviation (MNAD), analysis of variance (ANOVA), and coefficient of variation (CV) were used for analysis. The methods CS-ST, VN-S, and VN-ST performed well for accelerating monoexponential T(1ρ) mapping, with MNAD around 5% for AF = 2, which increases almost linearly with the AF to an MNAD of 13% for AF = 8, with all methods. For biexponential mapping, the VN-ST was the best method starting with MNAD of 7.4% for AF = 2 and reaching MNAD of 13.1% for AF = 8. The VN was able to produce 3D-T(1ρ) mapping of knee cartilage with lower error than CS. The best results were obtained by VN-ST, improving CS-ST method by nearly 7.5%. Nature Publishing Group UK 2020-11-05 /pmc/articles/PMC7645759/ /pubmed/33154515 http://dx.doi.org/10.1038/s41598-020-76126-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Zibetti, Marcelo V. W.
Johnson, Patricia M.
Sharafi, Azadeh
Hammernik, Kerstin
Knoll, Florian
Regatte, Ravinder R.
Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks
title Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks
title_full Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks
title_fullStr Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks
title_full_unstemmed Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks
title_short Rapid mono and biexponential 3D-T(1ρ) mapping of knee cartilage using variational networks
title_sort rapid mono and biexponential 3d-t(1ρ) mapping of knee cartilage using variational networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7645759/
https://www.ncbi.nlm.nih.gov/pubmed/33154515
http://dx.doi.org/10.1038/s41598-020-76126-x
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