Cargando…

Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma

Background: Circular RNAs (circRNAs), a novel class of endogenous noncoding RNAs, are involved in a variety of diseases, including several types of cancers. We hypothesized that circRNAs are involved in the tumorigenesis and development of clear cell renal cell carcinoma (ccRCC). Methods: To verify...

Descripción completa

Detalles Bibliográficos
Autores principales: Lv, Qi, Ma, Chunhui, Li, Haoming, Tan, Xuefeng, Wang, Gangmin, Zhang, Yinan, Wang, Peijun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7646169/
https://www.ncbi.nlm.nih.gov/pubmed/33193877
http://dx.doi.org/10.7150/jca.48770
_version_ 1783606741617868800
author Lv, Qi
Ma, Chunhui
Li, Haoming
Tan, Xuefeng
Wang, Gangmin
Zhang, Yinan
Wang, Peijun
author_facet Lv, Qi
Ma, Chunhui
Li, Haoming
Tan, Xuefeng
Wang, Gangmin
Zhang, Yinan
Wang, Peijun
author_sort Lv, Qi
collection PubMed
description Background: Circular RNAs (circRNAs), a novel class of endogenous noncoding RNAs, are involved in a variety of diseases, including several types of cancers. We hypothesized that circRNAs are involved in the tumorigenesis and development of clear cell renal cell carcinoma (ccRCC). Methods: To verify our hypothesis, we explored the circRNA expression profiles in 4 pairs of ccRCC tissues and their adjacent non-carcinoma tissues via microarray analysis. Selected circRNAs were further validated by qPCR. Moreover, hsa_circ_0005875 was selected for further study and the potential clinical values of hsa_circ_0005875 were investigated in 60 pairs of ccRCC tissues and adjacent normal controls. In addition, the role of hsa_circ_0005875 in ccRCC progression were performed using colony formation assay, Transwell assay and Martrigel-Transwell assay respectively. Finally, interactions between the circRNAs and miRNAs were predicted using Arraystar's miRNA target prediction software. Luciferase reporter assays were performed to evaluate the interaction between hsa_circ_0005875 and hsa_miR-145-5p. Results: The microarray data showed 1988 circRNAs were significantly dysregulated circRNAs, including 1033 upregulated and 955 downregulated ones in the ccRCC tissues. Hsa_circ_0005875 was confirmed to be significantly upregulated in the ccRCC tumor tissues and renal carcinoma cells. Further analysis revealed that hsa_circ_0005875 expression was associated with tumor size, pathological TNM stage, histological differentiation, and lymphatic metastasis. Functional experiments demonstrated that overexpression of hsa_circ_0005875 increased proliferation, migration and invasion abilities. Moreover, bioinformatics analysis and luciferase reporter assays suggest that hsa_circ_0005875 may serve as a ceRNA (competing endogenous RNA) of miR-145-5p to relieve the repressive effect of miR-145-5p on target ZEB2. Conclusions: These data indicate that hsa_circ_0005875 might play a role in promoting tumor growth and metastasis and be a potential biomarker of ccRCC.
format Online
Article
Text
id pubmed-7646169
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Ivyspring International Publisher
record_format MEDLINE/PubMed
spelling pubmed-76461692020-11-12 Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma Lv, Qi Ma, Chunhui Li, Haoming Tan, Xuefeng Wang, Gangmin Zhang, Yinan Wang, Peijun J Cancer Research Paper Background: Circular RNAs (circRNAs), a novel class of endogenous noncoding RNAs, are involved in a variety of diseases, including several types of cancers. We hypothesized that circRNAs are involved in the tumorigenesis and development of clear cell renal cell carcinoma (ccRCC). Methods: To verify our hypothesis, we explored the circRNA expression profiles in 4 pairs of ccRCC tissues and their adjacent non-carcinoma tissues via microarray analysis. Selected circRNAs were further validated by qPCR. Moreover, hsa_circ_0005875 was selected for further study and the potential clinical values of hsa_circ_0005875 were investigated in 60 pairs of ccRCC tissues and adjacent normal controls. In addition, the role of hsa_circ_0005875 in ccRCC progression were performed using colony formation assay, Transwell assay and Martrigel-Transwell assay respectively. Finally, interactions between the circRNAs and miRNAs were predicted using Arraystar's miRNA target prediction software. Luciferase reporter assays were performed to evaluate the interaction between hsa_circ_0005875 and hsa_miR-145-5p. Results: The microarray data showed 1988 circRNAs were significantly dysregulated circRNAs, including 1033 upregulated and 955 downregulated ones in the ccRCC tissues. Hsa_circ_0005875 was confirmed to be significantly upregulated in the ccRCC tumor tissues and renal carcinoma cells. Further analysis revealed that hsa_circ_0005875 expression was associated with tumor size, pathological TNM stage, histological differentiation, and lymphatic metastasis. Functional experiments demonstrated that overexpression of hsa_circ_0005875 increased proliferation, migration and invasion abilities. Moreover, bioinformatics analysis and luciferase reporter assays suggest that hsa_circ_0005875 may serve as a ceRNA (competing endogenous RNA) of miR-145-5p to relieve the repressive effect of miR-145-5p on target ZEB2. Conclusions: These data indicate that hsa_circ_0005875 might play a role in promoting tumor growth and metastasis and be a potential biomarker of ccRCC. Ivyspring International Publisher 2020-10-18 /pmc/articles/PMC7646169/ /pubmed/33193877 http://dx.doi.org/10.7150/jca.48770 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Lv, Qi
Ma, Chunhui
Li, Haoming
Tan, Xuefeng
Wang, Gangmin
Zhang, Yinan
Wang, Peijun
Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma
title Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma
title_full Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma
title_fullStr Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma
title_full_unstemmed Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma
title_short Circular RNA microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma
title_sort circular rna microarray expression profile and potential function of circ0005875 in clear cell renal cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7646169/
https://www.ncbi.nlm.nih.gov/pubmed/33193877
http://dx.doi.org/10.7150/jca.48770
work_keys_str_mv AT lvqi circularrnamicroarrayexpressionprofileandpotentialfunctionofcirc0005875inclearcellrenalcellcarcinoma
AT machunhui circularrnamicroarrayexpressionprofileandpotentialfunctionofcirc0005875inclearcellrenalcellcarcinoma
AT lihaoming circularrnamicroarrayexpressionprofileandpotentialfunctionofcirc0005875inclearcellrenalcellcarcinoma
AT tanxuefeng circularrnamicroarrayexpressionprofileandpotentialfunctionofcirc0005875inclearcellrenalcellcarcinoma
AT wanggangmin circularrnamicroarrayexpressionprofileandpotentialfunctionofcirc0005875inclearcellrenalcellcarcinoma
AT zhangyinan circularrnamicroarrayexpressionprofileandpotentialfunctionofcirc0005875inclearcellrenalcellcarcinoma
AT wangpeijun circularrnamicroarrayexpressionprofileandpotentialfunctionofcirc0005875inclearcellrenalcellcarcinoma