Cargando…

Large-Scale Metagenome Assembly Reveals Novel Animal-Associated Microbial Genomes, Biosynthetic Gene Clusters, and Other Genetic Diversity

Large-scale metagenome assemblies of human microbiomes have produced a vast catalogue of previously unseen microbial genomes; however, comparatively few microbial genomes derive from other vertebrates. Here, we generated 5,596 metagenome-assembled genomes (MAGs) from the gut metagenomes of 180 predo...

Descripción completa

Detalles Bibliográficos
Autores principales:	Youngblut, Nicholas D., de la Cuesta-Zuluaga, Jacobo, Reischer, Georg H., Dauser, Silke, Schuster, Nathalie, Walzer, Chris, Stalder, Gabrielle, Farnleitner, Andreas H., Ley, Ruth E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2020
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7646530/ https://www.ncbi.nlm.nih.gov/pubmed/33144315 http://dx.doi.org/10.1128/mSystems.01045-20

Ejemplares similares

Vertebrate host phylogeny influences gut archaeal diversity
por: Youngblut, Nicholas D., et al.
Publicado: (2021)

Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
por: Youngblut, Nicholas D., et al.
Publicado: (2019)

Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets
por: Youngblut, Nicholas D., et al.
Publicado: (2021)

Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut
por: de la Cuesta-Zuluaga, Jacobo, et al.
Publicado: (2021)

Obesity is the main driver of altered gut microbiome functions in the metabolically unhealthy
por: de la Cuesta-Zuluaga, Jacobo, et al.
Publicado: (2023)

ResMiCo: Increasing the quality of metagenome-assembled genomes with deep learning
por: Mineeva, Olga, et al.
Publicado: (2023)

Reclassification of Catabacter hongkongensis as Christensenella hongkongensis comb. nov. based on whole genome analysis
por: Liu, Xiaoying, et al.
Publicado: (2021)

Syntrophy via Interspecies H(2) Transfer between Christensenella and Methanobrevibacter Underlies Their Global Cooccurrence in the Human Gut
por: Ruaud, Albane, et al.
Publicado: (2020)

Mining metagenomes reveals diverse antibiotic biosynthetic genes in uncultured microbial communities
por: Amin, Dina H., et al.
Publicado: (2023)

Detection of a microbial source tracking marker by isothermal helicase-dependent amplification and a nucleic acid lateral-flow strip test
por: Kolm, Claudia, et al.
Publicado: (2019)

High abundance of genetic Bacteroidetes markers for total fecal pollution in pristine alpine soils suggests lack in specificity for feces
por: Vierheilig, Julia, et al.
Publicado: (2012)

Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem
por: Sánchez-Navarro, Roberto, et al.
Publicado: (2022)

Insights into rumen microbial biosynthetic gene cluster diversity through genome-resolved metagenomics
por: Anderson, Christopher L., et al.
Publicado: (2021)

Editorial: Microbial Source Tracking
por: Gourmelon, Michèle, et al.
Publicado: (2021)

Quantitative microbial faecal source tracking with sampling guided by hydrological catchment dynamics
por: Reischer, G H, et al.
Publicado: (2008)

Age- and Sex-Dependent Patterns of Gut Microbial Diversity in Human Adults
por: de la Cuesta-Zuluaga, Jacobo, et al.
Publicado: (2019)

Challenges and perspectives in the application of isothermal DNA amplification methods for food and water analysis
por: Martzy, Roland, et al.
Publicado: (2019)

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs
por: Meleshko, Dmitry, et al.
Publicado: (2019)

Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes
por: Papudeshi, Bhavya, et al.
Publicado: (2017)

Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
por: Walters, Kevin A., et al.
Publicado: (2022)

Multiparametric monitoring of microbial faecal pollution reveals the dominance of human contamination along the whole Danube River
por: Kirschner, A.K.T., et al.
Publicado: (2017)

A rapid and efficient strategy to identify and recover biosynthetic gene clusters from soil metagenomes
por: Negri, Timo, et al.
Publicado: (2022)

Secondary metabolite biosynthetic diversity in Arctic Ocean metagenomes
por: Rego, Adriana, et al.
Publicado: (2021)

Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
por: Stewart, Robert D., et al.
Publicado: (2018)

Recovery of High Quality Metagenome-Assembled Genomes From Full-Scale Activated Sludge Microbial Communities in a Tropical Climate Using Longitudinal Metagenome Sampling
por: Haryono, Mindia A. S., et al.
Publicado: (2022)

Metagenome-Assembled Genomes from Amazonian Soil Microbial Consortia
por: Mandro, Jéssica A., et al.
Publicado: (2022)

Metagenomic data for Halichondria panicea from Illumina and nanopore sequencing and preliminary genome assemblies for the sponge and two microbial symbionts
por: Strehlow, Brian W., et al.
Publicado: (2022)

A Complementary Isothermal Amplification Method to the U.S. EPA Quantitative Polymerase Chain Reaction Approach for the Detection of Enterococci in Environmental Waters
por: Kolm, Claudia, et al.
Publicado: (2017)

Genetic Microbial Source Tracking Support QMRA Modeling for a Riverine Wetland Drinking Water Resource
por: Derx, Julia, et al.
Publicado: (2021)

Corrigendum: Genetic microbial source tracking support QMRA modeling for a riverine wetland drinking water resource
por: Derx, Julia, et al.
Publicado: (2022)

Vibrio cholerae—An emerging pathogen in Austrian bathing waters?
por: Rehm, Carmen, et al.
Publicado: (2023)

MetaSort untangles metagenome assembly by reducing microbial community complexity
por: Ji, Peifeng, et al.
Publicado: (2017)

Microbial metagenomics
por: Mongodin, Emmanuel F, et al.
Publicado: (2005)

The cystic fibrosis lower airways microbial metagenome
por: Moran Losada, Patricia, et al.
Publicado: (2016)

Interpreting tree ensemble machine learning models with endoR
por: Ruaud, Albane, et al.
Publicado: (2022)

Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
por: Priest, Taylor, et al.
Publicado: (2021)

Emergent Biosynthetic Capacity in Simple Microbial Communities
por: Chiu, Hsuan-Chao, et al.
Publicado: (2014)

Metagenome-assembled genomes infer potential microbial metabolism in alkaline sulphidic tailings
por: Li, Wenjun, et al.
Publicado: (2021)

Hibernation in the pygmy slow loris (Nycticebus pygmaeus): multiday torpor in primates is not restricted to Madagascar
por: Ruf, Thomas, et al.
Publicado: (2015)

New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
por: Kroeger, Marie E., et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_uvso1uputh4mcdvdmq05b399o1