Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense

Rheum likiangense Samuelsson (Polygonaceae) is an endangered alpine rhubarb in the Qinghai-Tibet Plateau. In this study we report the complete chloroplast genome sequence (plastome) of Rh. likiangense. The assembled plastome is 162,291 bp in length with 31,741 bp inverted repeat (IR) regions and 128...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Mingyu, Xu, Renping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7646595/
https://www.ncbi.nlm.nih.gov/pubmed/33367058
http://dx.doi.org/10.1080/23802359.2020.1832930
_version_ 1783606821915721728
author Liu, Mingyu
Xu, Renping
author_facet Liu, Mingyu
Xu, Renping
author_sort Liu, Mingyu
collection PubMed
description Rheum likiangense Samuelsson (Polygonaceae) is an endangered alpine rhubarb in the Qinghai-Tibet Plateau. In this study we report the complete chloroplast genome sequence (plastome) of Rh. likiangense. The assembled plastome is 162,291 bp in length with 31,741 bp inverted repeat (IR) regions and 128 annotated genes, including 34 tRNA genes, 8 rRNA genes, and 86 protein-coding genes. Phylogenetic analyses based on the full plastome sequences suggest the close relationship of Rh. likiangense with Rh. acuminatum and Rh. nobile. The plastome reported here is highly useful for designing plastome SSR markers to conduct a further conservation genetic study of this endangered rhubarb.
format Online
Article
Text
id pubmed-7646595
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-76465952020-12-22 Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense Liu, Mingyu Xu, Renping Mitochondrial DNA B Resour Mitogenome Announcement Rheum likiangense Samuelsson (Polygonaceae) is an endangered alpine rhubarb in the Qinghai-Tibet Plateau. In this study we report the complete chloroplast genome sequence (plastome) of Rh. likiangense. The assembled plastome is 162,291 bp in length with 31,741 bp inverted repeat (IR) regions and 128 annotated genes, including 34 tRNA genes, 8 rRNA genes, and 86 protein-coding genes. Phylogenetic analyses based on the full plastome sequences suggest the close relationship of Rh. likiangense with Rh. acuminatum and Rh. nobile. The plastome reported here is highly useful for designing plastome SSR markers to conduct a further conservation genetic study of this endangered rhubarb. Taylor & Francis 2020-11-03 /pmc/articles/PMC7646595/ /pubmed/33367058 http://dx.doi.org/10.1080/23802359.2020.1832930 Text en © The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Mingyu
Xu, Renping
Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense
title Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense
title_full Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense
title_fullStr Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense
title_full_unstemmed Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense
title_short Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense
title_sort complete chloroplast genome sequence of an alpine rhubarb rheum likiangense
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7646595/
https://www.ncbi.nlm.nih.gov/pubmed/33367058
http://dx.doi.org/10.1080/23802359.2020.1832930
work_keys_str_mv AT liumingyu completechloroplastgenomesequenceofanalpinerhubarbrheumlikiangense
AT xurenping completechloroplastgenomesequenceofanalpinerhubarbrheumlikiangense

Ejemplares similares