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Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
Glioma is the most common and deadly tumor in central nervous system. According to previous studies, long noncoding RNAs (lncRNA) and transcription factors were significant factors of gliomas progression by regulating gliomas immune microenvironment. In our study, we built two independent cohorts fr...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7647786/ https://www.ncbi.nlm.nih.gov/pubmed/33178271 http://dx.doi.org/10.1155/2020/2319194 |
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author | Tian, Yixin Ke, Yi-Quan Ma, Yanxia |
author_facet | Tian, Yixin Ke, Yi-Quan Ma, Yanxia |
author_sort | Tian, Yixin |
collection | PubMed |
description | Glioma is the most common and deadly tumor in central nervous system. According to previous studies, long noncoding RNAs (lncRNA) and transcription factors were significant factors of gliomas progression by regulating gliomas immune microenvironment. In our study, we built two independent cohorts from CGGA and TCGA. And we extracted 253 immune-related lncRNA correlated with prognosis. After LASSO analysis and multivariate Cox regression analysis, 8 immune-related lncRNA were used to construct classifier. The effectiveness of classifier was confirmed in both CGGA (AUC = 0.869) and TCGA (AUC = 0.902) cohorts. The correlation between transcription factors and immune-related lncRNA was calculated by WCGNA. Eventually, we built a network between 8 lncRNA and transcription factors. The function of core immune-related lncRNA in gliomas immune microenvironment was also investigated by CIBERTSORT. Our research provided a strong classifier of immune-related lncRNA to predict gliomas patient outcome. We also found the correlation between core immune-related lncRNA and transcription factors. These results may stimulate new strategy of immunotherapy in gliomas patients. |
format | Online Article Text |
id | pubmed-7647786 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-76477862020-11-10 Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas Tian, Yixin Ke, Yi-Quan Ma, Yanxia J Oncol Research Article Glioma is the most common and deadly tumor in central nervous system. According to previous studies, long noncoding RNAs (lncRNA) and transcription factors were significant factors of gliomas progression by regulating gliomas immune microenvironment. In our study, we built two independent cohorts from CGGA and TCGA. And we extracted 253 immune-related lncRNA correlated with prognosis. After LASSO analysis and multivariate Cox regression analysis, 8 immune-related lncRNA were used to construct classifier. The effectiveness of classifier was confirmed in both CGGA (AUC = 0.869) and TCGA (AUC = 0.902) cohorts. The correlation between transcription factors and immune-related lncRNA was calculated by WCGNA. Eventually, we built a network between 8 lncRNA and transcription factors. The function of core immune-related lncRNA in gliomas immune microenvironment was also investigated by CIBERTSORT. Our research provided a strong classifier of immune-related lncRNA to predict gliomas patient outcome. We also found the correlation between core immune-related lncRNA and transcription factors. These results may stimulate new strategy of immunotherapy in gliomas patients. Hindawi 2020-10-30 /pmc/articles/PMC7647786/ /pubmed/33178271 http://dx.doi.org/10.1155/2020/2319194 Text en Copyright © 2020 Yixin Tian et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Tian, Yixin Ke, Yi-Quan Ma, Yanxia Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas |
title | Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas |
title_full | Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas |
title_fullStr | Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas |
title_full_unstemmed | Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas |
title_short | Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas |
title_sort | immune-related lncrna correlated with transcription factors provide strong prognostic prediction in gliomas |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7647786/ https://www.ncbi.nlm.nih.gov/pubmed/33178271 http://dx.doi.org/10.1155/2020/2319194 |
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