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Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas

Glioma is the most common and deadly tumor in central nervous system. According to previous studies, long noncoding RNAs (lncRNA) and transcription factors were significant factors of gliomas progression by regulating gliomas immune microenvironment. In our study, we built two independent cohorts fr...

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Detalles Bibliográficos
Autores principales: Tian, Yixin, Ke, Yi-Quan, Ma, Yanxia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7647786/
https://www.ncbi.nlm.nih.gov/pubmed/33178271
http://dx.doi.org/10.1155/2020/2319194
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author Tian, Yixin
Ke, Yi-Quan
Ma, Yanxia
author_facet Tian, Yixin
Ke, Yi-Quan
Ma, Yanxia
author_sort Tian, Yixin
collection PubMed
description Glioma is the most common and deadly tumor in central nervous system. According to previous studies, long noncoding RNAs (lncRNA) and transcription factors were significant factors of gliomas progression by regulating gliomas immune microenvironment. In our study, we built two independent cohorts from CGGA and TCGA. And we extracted 253 immune-related lncRNA correlated with prognosis. After LASSO analysis and multivariate Cox regression analysis, 8 immune-related lncRNA were used to construct classifier. The effectiveness of classifier was confirmed in both CGGA (AUC = 0.869) and TCGA (AUC = 0.902) cohorts. The correlation between transcription factors and immune-related lncRNA was calculated by WCGNA. Eventually, we built a network between 8 lncRNA and transcription factors. The function of core immune-related lncRNA in gliomas immune microenvironment was also investigated by CIBERTSORT. Our research provided a strong classifier of immune-related lncRNA to predict gliomas patient outcome. We also found the correlation between core immune-related lncRNA and transcription factors. These results may stimulate new strategy of immunotherapy in gliomas patients.
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spelling pubmed-76477862020-11-10 Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas Tian, Yixin Ke, Yi-Quan Ma, Yanxia J Oncol Research Article Glioma is the most common and deadly tumor in central nervous system. According to previous studies, long noncoding RNAs (lncRNA) and transcription factors were significant factors of gliomas progression by regulating gliomas immune microenvironment. In our study, we built two independent cohorts from CGGA and TCGA. And we extracted 253 immune-related lncRNA correlated with prognosis. After LASSO analysis and multivariate Cox regression analysis, 8 immune-related lncRNA were used to construct classifier. The effectiveness of classifier was confirmed in both CGGA (AUC = 0.869) and TCGA (AUC = 0.902) cohorts. The correlation between transcription factors and immune-related lncRNA was calculated by WCGNA. Eventually, we built a network between 8 lncRNA and transcription factors. The function of core immune-related lncRNA in gliomas immune microenvironment was also investigated by CIBERTSORT. Our research provided a strong classifier of immune-related lncRNA to predict gliomas patient outcome. We also found the correlation between core immune-related lncRNA and transcription factors. These results may stimulate new strategy of immunotherapy in gliomas patients. Hindawi 2020-10-30 /pmc/articles/PMC7647786/ /pubmed/33178271 http://dx.doi.org/10.1155/2020/2319194 Text en Copyright © 2020 Yixin Tian et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Tian, Yixin
Ke, Yi-Quan
Ma, Yanxia
Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
title Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
title_full Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
title_fullStr Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
title_full_unstemmed Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
title_short Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
title_sort immune-related lncrna correlated with transcription factors provide strong prognostic prediction in gliomas
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7647786/
https://www.ncbi.nlm.nih.gov/pubmed/33178271
http://dx.doi.org/10.1155/2020/2319194
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