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From deterministic to fuzzy decision-making in artificial cells

Building autonomous artificial cells capable of homeostasis requires regulatory networks to gather information and make decisions that take time and cost energy. Decisions based on few molecules may be inaccurate but are cheap and fast. Realizing decision-making with a few molecules in artificial ce...

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Autores principales: Greiss, Ferdinand, Daube, Shirley S., Noireaux, Vincent, Bar-Ziv, Roy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7648101/
https://www.ncbi.nlm.nih.gov/pubmed/33159084
http://dx.doi.org/10.1038/s41467-020-19395-4
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author Greiss, Ferdinand
Daube, Shirley S.
Noireaux, Vincent
Bar-Ziv, Roy
author_facet Greiss, Ferdinand
Daube, Shirley S.
Noireaux, Vincent
Bar-Ziv, Roy
author_sort Greiss, Ferdinand
collection PubMed
description Building autonomous artificial cells capable of homeostasis requires regulatory networks to gather information and make decisions that take time and cost energy. Decisions based on few molecules may be inaccurate but are cheap and fast. Realizing decision-making with a few molecules in artificial cells has remained a challenge. Here, we show decision-making by a bistable gene network in artificial cells with constant protein turnover. Reducing the number of gene copies from 10(5) to about 10 per cell revealed a transition from deterministic and slow decision-making to a fuzzy and rapid regime dominated by small-number fluctuations. Gene regulation was observed at lower DNA and protein concentrations than necessary in equilibrium, suggesting rate enhancement by co-expressional localization. The high-copy regime was characterized by a sharp transition and hysteresis, whereas the low-copy limit showed strong fluctuations, state switching, and cellular individuality across the decision-making point. Our results demonstrate information processing with low-power consumption inside artificial cells.
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spelling pubmed-76481012020-11-10 From deterministic to fuzzy decision-making in artificial cells Greiss, Ferdinand Daube, Shirley S. Noireaux, Vincent Bar-Ziv, Roy Nat Commun Article Building autonomous artificial cells capable of homeostasis requires regulatory networks to gather information and make decisions that take time and cost energy. Decisions based on few molecules may be inaccurate but are cheap and fast. Realizing decision-making with a few molecules in artificial cells has remained a challenge. Here, we show decision-making by a bistable gene network in artificial cells with constant protein turnover. Reducing the number of gene copies from 10(5) to about 10 per cell revealed a transition from deterministic and slow decision-making to a fuzzy and rapid regime dominated by small-number fluctuations. Gene regulation was observed at lower DNA and protein concentrations than necessary in equilibrium, suggesting rate enhancement by co-expressional localization. The high-copy regime was characterized by a sharp transition and hysteresis, whereas the low-copy limit showed strong fluctuations, state switching, and cellular individuality across the decision-making point. Our results demonstrate information processing with low-power consumption inside artificial cells. Nature Publishing Group UK 2020-11-06 /pmc/articles/PMC7648101/ /pubmed/33159084 http://dx.doi.org/10.1038/s41467-020-19395-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Greiss, Ferdinand
Daube, Shirley S.
Noireaux, Vincent
Bar-Ziv, Roy
From deterministic to fuzzy decision-making in artificial cells
title From deterministic to fuzzy decision-making in artificial cells
title_full From deterministic to fuzzy decision-making in artificial cells
title_fullStr From deterministic to fuzzy decision-making in artificial cells
title_full_unstemmed From deterministic to fuzzy decision-making in artificial cells
title_short From deterministic to fuzzy decision-making in artificial cells
title_sort from deterministic to fuzzy decision-making in artificial cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7648101/
https://www.ncbi.nlm.nih.gov/pubmed/33159084
http://dx.doi.org/10.1038/s41467-020-19395-4
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