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Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens
Clostridium perfringens beta-toxin (CPB) is linked to necrotic enteritis (over proliferation of bacteria) in several species showing cytotoxic effect on primary porcine endothelial and human precursor immune cells. P2X7 receptor on THP-1 cells is known to bind CPB. This is critical to understand the...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7649019/ https://www.ncbi.nlm.nih.gov/pubmed/33214747 http://dx.doi.org/10.6026/97320630016594 |
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author | Solanki, Amit Kumar Panwar, Deepak Kaushik, Himani Garg, Lalit C |
author_facet | Solanki, Amit Kumar Panwar, Deepak Kaushik, Himani Garg, Lalit C |
author_sort | Solanki, Amit Kumar |
collection | PubMed |
description | Clostridium perfringens beta-toxin (CPB) is linked to necrotic enteritis (over proliferation of bacteria) in several species showing cytotoxic effect on primary porcine endothelial and human precursor immune cells. P2X7 receptor on THP-1 cells is known to bind CPB. This is critical to understand the mechanism of pore formation for effective drug design. The structure of CPB and P2X7 receptor proteins were modeled using standard molecular modeling procedures (I-TASSER and Robetta server). This is followed by protein-protein docking (HADDOCK server) to study their molecular interaction. Interacting residues (19 residues from CPB and 21 residues from P2X7) were identified using the PISA server. Thus, we document the molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens towards drug design and development of drugs to control necrotic enteritis. |
format | Online Article Text |
id | pubmed-7649019 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-76490192020-11-18 Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens Solanki, Amit Kumar Panwar, Deepak Kaushik, Himani Garg, Lalit C Bioinformation Research Article Clostridium perfringens beta-toxin (CPB) is linked to necrotic enteritis (over proliferation of bacteria) in several species showing cytotoxic effect on primary porcine endothelial and human precursor immune cells. P2X7 receptor on THP-1 cells is known to bind CPB. This is critical to understand the mechanism of pore formation for effective drug design. The structure of CPB and P2X7 receptor proteins were modeled using standard molecular modeling procedures (I-TASSER and Robetta server). This is followed by protein-protein docking (HADDOCK server) to study their molecular interaction. Interacting residues (19 residues from CPB and 21 residues from P2X7) were identified using the PISA server. Thus, we document the molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens towards drug design and development of drugs to control necrotic enteritis. Biomedical Informatics 2020-08-31 /pmc/articles/PMC7649019/ /pubmed/33214747 http://dx.doi.org/10.6026/97320630016594 Text en © 2020 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Research Article Solanki, Amit Kumar Panwar, Deepak Kaushik, Himani Garg, Lalit C Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens |
title | Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens |
title_full | Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens |
title_fullStr | Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens |
title_full_unstemmed | Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens |
title_short | Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens |
title_sort | molecular docking analysis of p2x7 receptor with the beta toxin from clostridium perfringens |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7649019/ https://www.ncbi.nlm.nih.gov/pubmed/33214747 http://dx.doi.org/10.6026/97320630016594 |
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