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Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens

Clostridium perfringens beta-toxin (CPB) is linked to necrotic enteritis (over proliferation of bacteria) in several species showing cytotoxic effect on primary porcine endothelial and human precursor immune cells. P2X7 receptor on THP-1 cells is known to bind CPB. This is critical to understand the...

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Autores principales: Solanki, Amit Kumar, Panwar, Deepak, Kaushik, Himani, Garg, Lalit C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7649019/
https://www.ncbi.nlm.nih.gov/pubmed/33214747
http://dx.doi.org/10.6026/97320630016594
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author Solanki, Amit Kumar
Panwar, Deepak
Kaushik, Himani
Garg, Lalit C
author_facet Solanki, Amit Kumar
Panwar, Deepak
Kaushik, Himani
Garg, Lalit C
author_sort Solanki, Amit Kumar
collection PubMed
description Clostridium perfringens beta-toxin (CPB) is linked to necrotic enteritis (over proliferation of bacteria) in several species showing cytotoxic effect on primary porcine endothelial and human precursor immune cells. P2X7 receptor on THP-1 cells is known to bind CPB. This is critical to understand the mechanism of pore formation for effective drug design. The structure of CPB and P2X7 receptor proteins were modeled using standard molecular modeling procedures (I-TASSER and Robetta server). This is followed by protein-protein docking (HADDOCK server) to study their molecular interaction. Interacting residues (19 residues from CPB and 21 residues from P2X7) were identified using the PISA server. Thus, we document the molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens towards drug design and development of drugs to control necrotic enteritis.
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spelling pubmed-76490192020-11-18 Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens Solanki, Amit Kumar Panwar, Deepak Kaushik, Himani Garg, Lalit C Bioinformation Research Article Clostridium perfringens beta-toxin (CPB) is linked to necrotic enteritis (over proliferation of bacteria) in several species showing cytotoxic effect on primary porcine endothelial and human precursor immune cells. P2X7 receptor on THP-1 cells is known to bind CPB. This is critical to understand the mechanism of pore formation for effective drug design. The structure of CPB and P2X7 receptor proteins were modeled using standard molecular modeling procedures (I-TASSER and Robetta server). This is followed by protein-protein docking (HADDOCK server) to study their molecular interaction. Interacting residues (19 residues from CPB and 21 residues from P2X7) were identified using the PISA server. Thus, we document the molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens towards drug design and development of drugs to control necrotic enteritis. Biomedical Informatics 2020-08-31 /pmc/articles/PMC7649019/ /pubmed/33214747 http://dx.doi.org/10.6026/97320630016594 Text en © 2020 Biomedical Informatics http://creativecommons.org/licenses/by/3.0/ This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Research Article
Solanki, Amit Kumar
Panwar, Deepak
Kaushik, Himani
Garg, Lalit C
Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens
title Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens
title_full Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens
title_fullStr Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens
title_full_unstemmed Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens
title_short Molecular docking analysis of P2X7 receptor with the beta toxin from Clostridium perfringens
title_sort molecular docking analysis of p2x7 receptor with the beta toxin from clostridium perfringens
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7649019/
https://www.ncbi.nlm.nih.gov/pubmed/33214747
http://dx.doi.org/10.6026/97320630016594
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