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Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma

BACKGROUND: Uterine corpus endometrial carcinoma (UCEC) is a frequent gynecological malignancy with a poor prognosis particularly at an advanced stage. Herein, this study aims to construct prognostic markers of UCEC based on immune-related genes to predict the prognosis of UCEC. METHODS: We analyzed...

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Autores principales: Zhou, Cankun, Li, Chaomei, Yan, Fangli, Zheng, Yuhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7650210/
https://www.ncbi.nlm.nih.gov/pubmed/33292199
http://dx.doi.org/10.1186/s12935-020-01560-w
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author Zhou, Cankun
Li, Chaomei
Yan, Fangli
Zheng, Yuhua
author_facet Zhou, Cankun
Li, Chaomei
Yan, Fangli
Zheng, Yuhua
author_sort Zhou, Cankun
collection PubMed
description BACKGROUND: Uterine corpus endometrial carcinoma (UCEC) is a frequent gynecological malignancy with a poor prognosis particularly at an advanced stage. Herein, this study aims to construct prognostic markers of UCEC based on immune-related genes to predict the prognosis of UCEC. METHODS: We analyzed expression data of 575 UCEC patients from The Cancer Genome Atlas database and immune genes from the ImmPort database, which were used for generation and validation of the signature. We constructed a transcription factor regulatory network based on Cistrome databases, and also performed functional enrichment and pathway analyses for the differentially expressed immune genes. Moreover, the prognostic value of 410 immune genes was determined using the Cox regression analysis. We then constructed and verified a prognostic signature. Finally, we performed immune infiltration analysis using TIMER-generating immune cell content. RESULTS: The immune cell microenvironment as well as the PI3K-Akt, and MARK signaling pathways were involved in UCEC development. The established prognostic signature revealed a ten-gene prognostic signature, comprising of PDIA3, LTA, PSMC4, TNF, SBDS, HDGF, HTR3E, NR3C1, PGR, and CBLC. This signature showed a strong prognostic ability in both the training and testing sets and thus can be used as an independent tool to predict the prognosis of UCEC. In addition, levels of B cells and neutrophils were significantly correlated with the patient’s risk score, while the expression of ten genes was associated with immune cell infiltrates. CONCLUSIONS: In summary, the ten-gene prognostic signature may guide the selection of the immunotherapy for UCEC.
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spelling pubmed-76502102020-11-09 Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma Zhou, Cankun Li, Chaomei Yan, Fangli Zheng, Yuhua Cancer Cell Int Primary Research BACKGROUND: Uterine corpus endometrial carcinoma (UCEC) is a frequent gynecological malignancy with a poor prognosis particularly at an advanced stage. Herein, this study aims to construct prognostic markers of UCEC based on immune-related genes to predict the prognosis of UCEC. METHODS: We analyzed expression data of 575 UCEC patients from The Cancer Genome Atlas database and immune genes from the ImmPort database, which were used for generation and validation of the signature. We constructed a transcription factor regulatory network based on Cistrome databases, and also performed functional enrichment and pathway analyses for the differentially expressed immune genes. Moreover, the prognostic value of 410 immune genes was determined using the Cox regression analysis. We then constructed and verified a prognostic signature. Finally, we performed immune infiltration analysis using TIMER-generating immune cell content. RESULTS: The immune cell microenvironment as well as the PI3K-Akt, and MARK signaling pathways were involved in UCEC development. The established prognostic signature revealed a ten-gene prognostic signature, comprising of PDIA3, LTA, PSMC4, TNF, SBDS, HDGF, HTR3E, NR3C1, PGR, and CBLC. This signature showed a strong prognostic ability in both the training and testing sets and thus can be used as an independent tool to predict the prognosis of UCEC. In addition, levels of B cells and neutrophils were significantly correlated with the patient’s risk score, while the expression of ten genes was associated with immune cell infiltrates. CONCLUSIONS: In summary, the ten-gene prognostic signature may guide the selection of the immunotherapy for UCEC. BioMed Central 2020-11-09 /pmc/articles/PMC7650210/ /pubmed/33292199 http://dx.doi.org/10.1186/s12935-020-01560-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Primary Research
Zhou, Cankun
Li, Chaomei
Yan, Fangli
Zheng, Yuhua
Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
title Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
title_full Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
title_fullStr Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
title_full_unstemmed Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
title_short Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
title_sort identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
topic Primary Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7650210/
https://www.ncbi.nlm.nih.gov/pubmed/33292199
http://dx.doi.org/10.1186/s12935-020-01560-w
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