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Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma
BACKGROUND: Uterine corpus endometrial carcinoma (UCEC) is a frequent gynecological malignancy with a poor prognosis particularly at an advanced stage. Herein, this study aims to construct prognostic markers of UCEC based on immune-related genes to predict the prognosis of UCEC. METHODS: We analyzed...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7650210/ https://www.ncbi.nlm.nih.gov/pubmed/33292199 http://dx.doi.org/10.1186/s12935-020-01560-w |
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author | Zhou, Cankun Li, Chaomei Yan, Fangli Zheng, Yuhua |
author_facet | Zhou, Cankun Li, Chaomei Yan, Fangli Zheng, Yuhua |
author_sort | Zhou, Cankun |
collection | PubMed |
description | BACKGROUND: Uterine corpus endometrial carcinoma (UCEC) is a frequent gynecological malignancy with a poor prognosis particularly at an advanced stage. Herein, this study aims to construct prognostic markers of UCEC based on immune-related genes to predict the prognosis of UCEC. METHODS: We analyzed expression data of 575 UCEC patients from The Cancer Genome Atlas database and immune genes from the ImmPort database, which were used for generation and validation of the signature. We constructed a transcription factor regulatory network based on Cistrome databases, and also performed functional enrichment and pathway analyses for the differentially expressed immune genes. Moreover, the prognostic value of 410 immune genes was determined using the Cox regression analysis. We then constructed and verified a prognostic signature. Finally, we performed immune infiltration analysis using TIMER-generating immune cell content. RESULTS: The immune cell microenvironment as well as the PI3K-Akt, and MARK signaling pathways were involved in UCEC development. The established prognostic signature revealed a ten-gene prognostic signature, comprising of PDIA3, LTA, PSMC4, TNF, SBDS, HDGF, HTR3E, NR3C1, PGR, and CBLC. This signature showed a strong prognostic ability in both the training and testing sets and thus can be used as an independent tool to predict the prognosis of UCEC. In addition, levels of B cells and neutrophils were significantly correlated with the patient’s risk score, while the expression of ten genes was associated with immune cell infiltrates. CONCLUSIONS: In summary, the ten-gene prognostic signature may guide the selection of the immunotherapy for UCEC. |
format | Online Article Text |
id | pubmed-7650210 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-76502102020-11-09 Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma Zhou, Cankun Li, Chaomei Yan, Fangli Zheng, Yuhua Cancer Cell Int Primary Research BACKGROUND: Uterine corpus endometrial carcinoma (UCEC) is a frequent gynecological malignancy with a poor prognosis particularly at an advanced stage. Herein, this study aims to construct prognostic markers of UCEC based on immune-related genes to predict the prognosis of UCEC. METHODS: We analyzed expression data of 575 UCEC patients from The Cancer Genome Atlas database and immune genes from the ImmPort database, which were used for generation and validation of the signature. We constructed a transcription factor regulatory network based on Cistrome databases, and also performed functional enrichment and pathway analyses for the differentially expressed immune genes. Moreover, the prognostic value of 410 immune genes was determined using the Cox regression analysis. We then constructed and verified a prognostic signature. Finally, we performed immune infiltration analysis using TIMER-generating immune cell content. RESULTS: The immune cell microenvironment as well as the PI3K-Akt, and MARK signaling pathways were involved in UCEC development. The established prognostic signature revealed a ten-gene prognostic signature, comprising of PDIA3, LTA, PSMC4, TNF, SBDS, HDGF, HTR3E, NR3C1, PGR, and CBLC. This signature showed a strong prognostic ability in both the training and testing sets and thus can be used as an independent tool to predict the prognosis of UCEC. In addition, levels of B cells and neutrophils were significantly correlated with the patient’s risk score, while the expression of ten genes was associated with immune cell infiltrates. CONCLUSIONS: In summary, the ten-gene prognostic signature may guide the selection of the immunotherapy for UCEC. BioMed Central 2020-11-09 /pmc/articles/PMC7650210/ /pubmed/33292199 http://dx.doi.org/10.1186/s12935-020-01560-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Primary Research Zhou, Cankun Li, Chaomei Yan, Fangli Zheng, Yuhua Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma |
title | Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma |
title_full | Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma |
title_fullStr | Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma |
title_full_unstemmed | Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma |
title_short | Identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma |
title_sort | identification of an immune gene signature for predicting the prognosis of patients with uterine corpus endometrial carcinoma |
topic | Primary Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7650210/ https://www.ncbi.nlm.nih.gov/pubmed/33292199 http://dx.doi.org/10.1186/s12935-020-01560-w |
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