Cargando…

MGMIN: A Normalization Method for Correcting Probe Design Bias in Illumina Infinium HumanMethylation450 BeadChips

The Illumina Infinium HumanMethylation450 Beadchips have been widely utilized in epigenome-wide association studies (EWAS). However, the existing two types of probes (type I and type II), with the distribution of measurements of probes and dynamic range different, may bias downstream analyses. Here,...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Zhenxing, Liu, Yongzhuang, Wang, Yadong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2020
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7652792/ https://www.ncbi.nlm.nih.gov/pubmed/33193611 http://dx.doi.org/10.3389/fgene.2020.538492

Ejemplares similares

A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
por: Wang, Zhenxing, et al.
Publicado: (2018)

SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips
por: Maksimovic, Jovana, et al.
Publicado: (2012)

Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data
por: Morris, Tiffany J., et al.
Publicado: (2015)

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array
por: Price, E Magda, et al.
Publicado: (2013)

Impact of SNPs on methylation readouts by Illumina Infinium HumanMethylation450 BeadChip Array: implications for comparative population studies
por: Daca-Roszak, Patrycja, et al.
Publicado: (2015)

Correlation of Infinium HumanMethylation450K and MethylationEPIC BeadChip arrays in cartilage
por: Cheung, Kathleen, et al.
Publicado: (2019)

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip
por: Xu, Zongli, et al.
Publicado: (2016)

FastDMA: An Infinium HumanMethylation450 Beadchip Analyzer
por: Wu, Dingming, et al.
Publicado: (2013)

An evaluation of processing methods for HumanMethylation450 BeadChip data
por: Liu, Jie, et al.
Publicado: (2016)

Using Illumina Infinium HumanMethylation 450K BeadChip to explore genome-wide DNA methylation profiles in a human hepatocellular carcinoma cell line
por: Sun, Ning, et al.
Publicado: (2018)

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform
por: Marabita, Francesco, et al.
Publicado: (2013)

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
por: Ritchie, Matthew E., et al.
Publicado: (2009)

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
por: Ritchie, Matthew E, et al.
Publicado: (2011)

Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data
por: Ross, Jason P., et al.
Publicado: (2022)

Identification of polymorphic and off-target probe binding sites on the Illumina Infinium MethylationEPIC BeadChip
por: McCartney, Daniel L., et al.
Publicado: (2016)

A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip(®) for Methylome Profiling
por: Clark, Christine, et al.
Publicado: (2012)

Genome-wide DNA methylation detection by MethylCap-seq and Infinium HumanMethylation450 BeadChips: an independent large-scale comparison
por: De Meyer, Tim, et al.
Publicado: (2015)

Evaluation of pre-processing on the meta-analysis of DNA methylation data from the Illumina HumanMethylation450 BeadChip platform
por: Sala, Claudia, et al.
Publicado: (2020)

DNA methylation levels are highly correlated between pooled samples and averaged values when analysed using the Infinium HumanMethylation450 BeadChip array
por: Gallego-Fabrega, Cristina, et al.
Publicado: (2015)

GMQN: A Reference-Based Method for Correcting Batch Effects and Probe Bias in HumanMethylation BeadChip
por: Xiong, Zhuang, et al.
Publicado: (2022)

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
por: Chen, Yi-an, et al.
Publicado: (2013)

A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies
por: Lehne, Benjamin, et al.
Publicado: (2015)

Erratum to: A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies
por: Lehne, Benjamin, et al.
Publicado: (2016)

Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes
por: Zhou, Wanding, et al.
Publicado: (2017)

Genome-wide methylation profiling of early colorectal cancer using an Illumina Infinium Methylation EPIC BeadChip
por: Wu, Yu-Ling, et al.
Publicado: (2022)

The impact of low input DNA on the reliability of DNA methylation as measured by the Illumina Infinium MethylationEPIC BeadChip
por: Watkins, Sarah Holmes, et al.
Publicado: (2022)

Measuring the methylome in clinical samples: Improved processing of the Infinium Human Methylation450 BeadChip Array
por: Pan, Hong, et al.
Publicado: (2012)

Lists of HumanMethylation450 BeadChip probes with nucleotide-variant information obtained from the Phase 3 data of the 1000 Genomes Project
por: Okamura, Kohji, et al.
Publicado: (2015)

Illumina WG-6 BeadChip strips should be normalized separately
por: Shi, Wei, et al.
Publicado: (2009)

Marmal-aid – a database for Infinium HumanMethylation450
por: Lowe, Robert, et al.
Publicado: (2013)

RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip
por: Xu, Zongli, et al.
Publicado: (2017)

A novel principal component based method for identifying differentially methylated regions in Illumina Infinium MethylationEPIC BeadChip data
por: Zheng, Yuanchao, et al.
Publicado: (2023)

Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies
por: Needhamsen, Maria, et al.
Publicado: (2017)

Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy
por: Murat, Katarzyna, et al.
Publicado: (2020)

Reproducibility of the Infinium methylationEPIC BeadChip assay using low DNA amounts
por: Christiansen, Steffan Noe, et al.
Publicado: (2022)

Identification of methylation states of DNA regions for Illumina methylation BeadChip
por: Luo, Ximei, et al.
Publicado: (2020)

The correlation of methylation levels measured using Illumina 450K and EPIC BeadChips in blood samples
por: Logue, Mark W, et al.
Publicado: (2017)

Critical evaluation of the reliability of DNA methylation probes on the Illumina MethylationEPIC BeadChip microarrays
por: Zhang, Wei, et al.
Publicado: (2023)

Comparison of methylation patterns generated from genomic and cell-line derived DNA using the Illumina Infinium MethylationEPIC BeadChip array
por: Smyth, L. J., et al.
Publicado: (2019)

Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips
por: Shi, Wei, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_6h7f2umo3eor9an3bmamoscnte