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Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens

BACKGROUND: Respiratory infections are a serious threat to human health. So, rapid detection of all respiratory pathogens can facilitate prompt treatment and prevent the deterioration of respiratory disease. Previously published primers and probes of the TaqMan array card (TAC) for respiratory patho...

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Autores principales: Liu, Keke, Jing, Hongbo, Chen, Ying, Zheng, Xin, Jiang, Hua, Kong, Decong, Zheng, Yvling, Chen, Shuiping, Liu, Peng, Jiang, Yongqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7653217/
https://www.ncbi.nlm.nih.gov/pubmed/33172401
http://dx.doi.org/10.1186/s12879-020-05562-x
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author Liu, Keke
Jing, Hongbo
Chen, Ying
Zheng, Xin
Jiang, Hua
Kong, Decong
Zheng, Yvling
Chen, Shuiping
Liu, Peng
Jiang, Yongqiang
author_facet Liu, Keke
Jing, Hongbo
Chen, Ying
Zheng, Xin
Jiang, Hua
Kong, Decong
Zheng, Yvling
Chen, Shuiping
Liu, Peng
Jiang, Yongqiang
author_sort Liu, Keke
collection PubMed
description BACKGROUND: Respiratory infections are a serious threat to human health. So, rapid detection of all respiratory pathogens can facilitate prompt treatment and prevent the deterioration of respiratory disease. Previously published primers and probes of the TaqMan array card (TAC) for respiratory pathogens are not sensitive to Chinese clinical specimens. This study aimed to develop and improve the TAC assay to detect 28 respiratory viral and bacterial pathogens in a Chinese population. METHODS: To improve the sensitivity, we redesigned the primers and probes, and labeled the probes with minor groove binders. The amplification efficiency, sensitivity, and specificity of the primers and probes were determined using target-gene containing standard plasmids. The detection performance of the TAC was evaluated on 754 clinical specimens and the results were compared with those from conventional methods. RESULTS: The performance of the TAC assay was evaluated using 754 clinical throat swab samples and the results were compared with those from gold-standard methods. The sensitivity and specificity were 95.4 and 96.6%, respectively. The lowest detection limit of the TAC was 10 to 100 copies/μL. CONCLUSIONS: TAC is an efficient, accurate, and high-throughput approach to detecting multiple respiratory pathogens simultaneously and is a promising tool for the identification of pathogen outbreaks.
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spelling pubmed-76532172020-11-10 Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens Liu, Keke Jing, Hongbo Chen, Ying Zheng, Xin Jiang, Hua Kong, Decong Zheng, Yvling Chen, Shuiping Liu, Peng Jiang, Yongqiang BMC Infect Dis Research Article BACKGROUND: Respiratory infections are a serious threat to human health. So, rapid detection of all respiratory pathogens can facilitate prompt treatment and prevent the deterioration of respiratory disease. Previously published primers and probes of the TaqMan array card (TAC) for respiratory pathogens are not sensitive to Chinese clinical specimens. This study aimed to develop and improve the TAC assay to detect 28 respiratory viral and bacterial pathogens in a Chinese population. METHODS: To improve the sensitivity, we redesigned the primers and probes, and labeled the probes with minor groove binders. The amplification efficiency, sensitivity, and specificity of the primers and probes were determined using target-gene containing standard plasmids. The detection performance of the TAC was evaluated on 754 clinical specimens and the results were compared with those from conventional methods. RESULTS: The performance of the TAC assay was evaluated using 754 clinical throat swab samples and the results were compared with those from gold-standard methods. The sensitivity and specificity were 95.4 and 96.6%, respectively. The lowest detection limit of the TAC was 10 to 100 copies/μL. CONCLUSIONS: TAC is an efficient, accurate, and high-throughput approach to detecting multiple respiratory pathogens simultaneously and is a promising tool for the identification of pathogen outbreaks. BioMed Central 2020-11-10 /pmc/articles/PMC7653217/ /pubmed/33172401 http://dx.doi.org/10.1186/s12879-020-05562-x Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Liu, Keke
Jing, Hongbo
Chen, Ying
Zheng, Xin
Jiang, Hua
Kong, Decong
Zheng, Yvling
Chen, Shuiping
Liu, Peng
Jiang, Yongqiang
Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens
title Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens
title_full Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens
title_fullStr Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens
title_full_unstemmed Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens
title_short Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens
title_sort evaluation of taqman array card (tac) for the detection of 28 respiratory pathogens
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7653217/
https://www.ncbi.nlm.nih.gov/pubmed/33172401
http://dx.doi.org/10.1186/s12879-020-05562-x
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