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Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions

BACKGROUND: Molecular Recognition Features (MoRFs) are short protein regions present in intrinsically disordered protein (IDPs) sequences. MoRFs interact with structured partner protein and upon interaction, they undergo a disorder-to-order transition to perform various biological functions. Analyse...

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Autores principales: Sharma, Ronesh, Sharma, Alok, Patil, Ashwini, Tsunoda, Tatsuhiko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7653905/
https://www.ncbi.nlm.nih.gov/pubmed/30717652
http://dx.doi.org/10.1186/s12859-018-2396-7
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author Sharma, Ronesh
Sharma, Alok
Patil, Ashwini
Tsunoda, Tatsuhiko
author_facet Sharma, Ronesh
Sharma, Alok
Patil, Ashwini
Tsunoda, Tatsuhiko
author_sort Sharma, Ronesh
collection PubMed
description BACKGROUND: Molecular Recognition Features (MoRFs) are short protein regions present in intrinsically disordered protein (IDPs) sequences. MoRFs interact with structured partner protein and upon interaction, they undergo a disorder-to-order transition to perform various biological functions. Analyses of MoRFs are important towards understanding their function. RESULTS: Performance is reported using the MoRF dataset that has been previously used to compare the other existing MoRF predictors. The performance obtained in this study is equivalent to the benchmarked OPAL predictor, i.e., OPAL achieved AUC of 0.815, whereas the model in this study achieved AUC of 0.819 using TEST set. CONCLUSION: Achieving comparable performance, the proposed method can be used as an alternative approach for MoRF prediction. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12859-018-2396-7) contains supplementary material, which is available to authorized users.
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spelling pubmed-76539052020-11-10 Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions Sharma, Ronesh Sharma, Alok Patil, Ashwini Tsunoda, Tatsuhiko BMC Bioinformatics Research BACKGROUND: Molecular Recognition Features (MoRFs) are short protein regions present in intrinsically disordered protein (IDPs) sequences. MoRFs interact with structured partner protein and upon interaction, they undergo a disorder-to-order transition to perform various biological functions. Analyses of MoRFs are important towards understanding their function. RESULTS: Performance is reported using the MoRF dataset that has been previously used to compare the other existing MoRF predictors. The performance obtained in this study is equivalent to the benchmarked OPAL predictor, i.e., OPAL achieved AUC of 0.815, whereas the model in this study achieved AUC of 0.819 using TEST set. CONCLUSION: Achieving comparable performance, the proposed method can be used as an alternative approach for MoRF prediction. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12859-018-2396-7) contains supplementary material, which is available to authorized users. BioMed Central 2019-02-04 /pmc/articles/PMC7653905/ /pubmed/30717652 http://dx.doi.org/10.1186/s12859-018-2396-7 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Sharma, Ronesh
Sharma, Alok
Patil, Ashwini
Tsunoda, Tatsuhiko
Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions
title Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions
title_full Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions
title_fullStr Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions
title_full_unstemmed Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions
title_short Discovering MoRFs by trisecting intrinsically disordered protein sequence into terminals and middle regions
title_sort discovering morfs by trisecting intrinsically disordered protein sequence into terminals and middle regions
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7653905/
https://www.ncbi.nlm.nih.gov/pubmed/30717652
http://dx.doi.org/10.1186/s12859-018-2396-7
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