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MULTI-ANCESTRY GENETIC STUDY IN 5,876 PATIENTS IDENTIFIES AN ASSOCIATION BETWEEN EXCITOTOXIC GENES AND EARLY OUTCOMES AFTER ACUTE ISCHEMIC STROKE.
During the first hours after stroke onset neurological deficits can be highly unstable: some patients rapidly improve, while others deteriorate. This early neurological instability has a major impact on long-term outcome. Here, we aimed to determine the genetic architecture of early neurological ins...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7654887/ https://www.ncbi.nlm.nih.gov/pubmed/33173895 http://dx.doi.org/10.1101/2020.10.29.20222257 |
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author | Ibanez, Laura Heitsch, Laura Carrera, Caty Farias, Fabiana H.G. Dhar, Rajat Budde, John Bergmann, Kristy Bradley, Joseph Harari, Oscar Phuah, Chia-Ling Lemmens, Robin Souza, Alessandro A. Viana Oliveira Moniche, Francisco Cabezas-Juan, Antonio Arenillas, Juan Francisco Krupinksi, Jerzy Cullell, Natalia Torres-Aguila, Nuria Muiño, Elena Cárcel-Márquez, Jara Marti-Fabregas, Joan Delgado-Mederos, Raquel Marin-Bueno, Rebeca Hornick, Alejandro Vives-Bauza, Cristofol Navarro, Rosa Diaz Tur, Silvia Jimenez, Carmen Obach, Victor Segura, Tomas Serrano-Heras, Gemma Chung, Jong-Won Roquer, Jaume Soriano-Tarraga, Carol Giralt-Steinhauer, Eva Mola-Caminal, Marina Pera, Joanna Lapicka-Bodzioch, Katarzyna Derbisz, Justyna Davalos, Antoni Lopez-Cancio, Elena Muñoz, Lucia Tatlisumak, Turgut Molina, Carlos Ribo, Marc Bustamante, Alejandro Sobrino, Tomas Castillo-Sanchez, Jose Campos, Francisco Rodriguez-Castro, Emilio Arias-Rivas, Susana Rodríguez-Yáñez, Manuel Herbosa, Christina Ford, Andria L. Arauz, Antonio Lopes-Cendes, Iscia Lowenkopf, Theodore Barboza, Miguel A. Amini, Hajar Stamova, Boryana Ander, Bradley P. Sharp, Frank R Kim, Gyeong Moon Bang, Oh Young Jimenez-Conde, Jordi Slowik, Agnieszka Stribian, Daniel Tsai, Ellen A. Burkly, Linda C. Montaner, Joan Fernandez-Cadenas, Israel Lee, Jin-Moo Cruchaga, Carlos |
author_facet | Ibanez, Laura Heitsch, Laura Carrera, Caty Farias, Fabiana H.G. Dhar, Rajat Budde, John Bergmann, Kristy Bradley, Joseph Harari, Oscar Phuah, Chia-Ling Lemmens, Robin Souza, Alessandro A. Viana Oliveira Moniche, Francisco Cabezas-Juan, Antonio Arenillas, Juan Francisco Krupinksi, Jerzy Cullell, Natalia Torres-Aguila, Nuria Muiño, Elena Cárcel-Márquez, Jara Marti-Fabregas, Joan Delgado-Mederos, Raquel Marin-Bueno, Rebeca Hornick, Alejandro Vives-Bauza, Cristofol Navarro, Rosa Diaz Tur, Silvia Jimenez, Carmen Obach, Victor Segura, Tomas Serrano-Heras, Gemma Chung, Jong-Won Roquer, Jaume Soriano-Tarraga, Carol Giralt-Steinhauer, Eva Mola-Caminal, Marina Pera, Joanna Lapicka-Bodzioch, Katarzyna Derbisz, Justyna Davalos, Antoni Lopez-Cancio, Elena Muñoz, Lucia Tatlisumak, Turgut Molina, Carlos Ribo, Marc Bustamante, Alejandro Sobrino, Tomas Castillo-Sanchez, Jose Campos, Francisco Rodriguez-Castro, Emilio Arias-Rivas, Susana Rodríguez-Yáñez, Manuel Herbosa, Christina Ford, Andria L. Arauz, Antonio Lopes-Cendes, Iscia Lowenkopf, Theodore Barboza, Miguel A. Amini, Hajar Stamova, Boryana Ander, Bradley P. Sharp, Frank R Kim, Gyeong Moon Bang, Oh Young Jimenez-Conde, Jordi Slowik, Agnieszka Stribian, Daniel Tsai, Ellen A. Burkly, Linda C. Montaner, Joan Fernandez-Cadenas, Israel Lee, Jin-Moo Cruchaga, Carlos |
author_sort | Ibanez, Laura |
collection | PubMed |
description | During the first hours after stroke onset neurological deficits can be highly unstable: some patients rapidly improve, while others deteriorate. This early neurological instability has a major impact on long-term outcome. Here, we aimed to determine the genetic architecture of early neurological instability measured by the difference between NIH stroke scale (NIHSS) within six hours of stroke onset and NIHSS at 24h (ΔNIHSS). A total of 5,876 individuals from seven countries (Spain, Finland, Poland, United States, Costa Rica, Mexico and Korea) were studied using a multi-ancestry meta-analyses. We found that 8.7% of ΔNIHSS variance was explained by common genetic variations, and also that early neurological instability has a different genetic architecture than that of stroke risk. Seven loci (2p25.1, 2q31.2, 2q33.3, 4q34.3, 5q33.2, 6q26 and 7p21.1) were genome-wide significant and explained 2.1% of the variability suggesting that additional variants influence early change in neurological deficits. We used functional genomics and bioinformatic annotation to identify the genes driving the association from each loci. eQTL mapping and SMR indicate that ADAM23 (log Bayes Factor (LBF)=6.34) was driving the association for 2q33.3. Gene based analyses suggested that GRIA1 (LBF=5.26), which is predominantly expressed in brain, is the gene driving the association for the 5q33.2 locus. These analyses also nominated PARK2 (LBF=5.30) and ABCB5 (LBF=5.70) for the 6q26 and 7p21.1 loci. Human brain single nuclei RNA-seq indicates that the gene expression of ADAM23 and GRIA1 is enriched in neurons. ADAM23, a pre-synaptic protein, and GRIA1, a protein subunit of the AMPA receptor, are part of a synaptic protein complex that modulates neuronal excitability. These data provides the first evidence in humans that excitotoxicity may contribute to early neurological instability after acute ischemic stroke. |
format | Online Article Text |
id | pubmed-7654887 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-76548872020-11-11 MULTI-ANCESTRY GENETIC STUDY IN 5,876 PATIENTS IDENTIFIES AN ASSOCIATION BETWEEN EXCITOTOXIC GENES AND EARLY OUTCOMES AFTER ACUTE ISCHEMIC STROKE. Ibanez, Laura Heitsch, Laura Carrera, Caty Farias, Fabiana H.G. Dhar, Rajat Budde, John Bergmann, Kristy Bradley, Joseph Harari, Oscar Phuah, Chia-Ling Lemmens, Robin Souza, Alessandro A. Viana Oliveira Moniche, Francisco Cabezas-Juan, Antonio Arenillas, Juan Francisco Krupinksi, Jerzy Cullell, Natalia Torres-Aguila, Nuria Muiño, Elena Cárcel-Márquez, Jara Marti-Fabregas, Joan Delgado-Mederos, Raquel Marin-Bueno, Rebeca Hornick, Alejandro Vives-Bauza, Cristofol Navarro, Rosa Diaz Tur, Silvia Jimenez, Carmen Obach, Victor Segura, Tomas Serrano-Heras, Gemma Chung, Jong-Won Roquer, Jaume Soriano-Tarraga, Carol Giralt-Steinhauer, Eva Mola-Caminal, Marina Pera, Joanna Lapicka-Bodzioch, Katarzyna Derbisz, Justyna Davalos, Antoni Lopez-Cancio, Elena Muñoz, Lucia Tatlisumak, Turgut Molina, Carlos Ribo, Marc Bustamante, Alejandro Sobrino, Tomas Castillo-Sanchez, Jose Campos, Francisco Rodriguez-Castro, Emilio Arias-Rivas, Susana Rodríguez-Yáñez, Manuel Herbosa, Christina Ford, Andria L. Arauz, Antonio Lopes-Cendes, Iscia Lowenkopf, Theodore Barboza, Miguel A. Amini, Hajar Stamova, Boryana Ander, Bradley P. Sharp, Frank R Kim, Gyeong Moon Bang, Oh Young Jimenez-Conde, Jordi Slowik, Agnieszka Stribian, Daniel Tsai, Ellen A. Burkly, Linda C. Montaner, Joan Fernandez-Cadenas, Israel Lee, Jin-Moo Cruchaga, Carlos medRxiv Article During the first hours after stroke onset neurological deficits can be highly unstable: some patients rapidly improve, while others deteriorate. This early neurological instability has a major impact on long-term outcome. Here, we aimed to determine the genetic architecture of early neurological instability measured by the difference between NIH stroke scale (NIHSS) within six hours of stroke onset and NIHSS at 24h (ΔNIHSS). A total of 5,876 individuals from seven countries (Spain, Finland, Poland, United States, Costa Rica, Mexico and Korea) were studied using a multi-ancestry meta-analyses. We found that 8.7% of ΔNIHSS variance was explained by common genetic variations, and also that early neurological instability has a different genetic architecture than that of stroke risk. Seven loci (2p25.1, 2q31.2, 2q33.3, 4q34.3, 5q33.2, 6q26 and 7p21.1) were genome-wide significant and explained 2.1% of the variability suggesting that additional variants influence early change in neurological deficits. We used functional genomics and bioinformatic annotation to identify the genes driving the association from each loci. eQTL mapping and SMR indicate that ADAM23 (log Bayes Factor (LBF)=6.34) was driving the association for 2q33.3. Gene based analyses suggested that GRIA1 (LBF=5.26), which is predominantly expressed in brain, is the gene driving the association for the 5q33.2 locus. These analyses also nominated PARK2 (LBF=5.30) and ABCB5 (LBF=5.70) for the 6q26 and 7p21.1 loci. Human brain single nuclei RNA-seq indicates that the gene expression of ADAM23 and GRIA1 is enriched in neurons. ADAM23, a pre-synaptic protein, and GRIA1, a protein subunit of the AMPA receptor, are part of a synaptic protein complex that modulates neuronal excitability. These data provides the first evidence in humans that excitotoxicity may contribute to early neurological instability after acute ischemic stroke. Cold Spring Harbor Laboratory 2020-11-03 /pmc/articles/PMC7654887/ /pubmed/33173895 http://dx.doi.org/10.1101/2020.10.29.20222257 Text en http://creativecommons.org/licenses/by-nc-nd/4.0/It is made available under a CC-BY-NC-ND 4.0 International license (http://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Article Ibanez, Laura Heitsch, Laura Carrera, Caty Farias, Fabiana H.G. Dhar, Rajat Budde, John Bergmann, Kristy Bradley, Joseph Harari, Oscar Phuah, Chia-Ling Lemmens, Robin Souza, Alessandro A. Viana Oliveira Moniche, Francisco Cabezas-Juan, Antonio Arenillas, Juan Francisco Krupinksi, Jerzy Cullell, Natalia Torres-Aguila, Nuria Muiño, Elena Cárcel-Márquez, Jara Marti-Fabregas, Joan Delgado-Mederos, Raquel Marin-Bueno, Rebeca Hornick, Alejandro Vives-Bauza, Cristofol Navarro, Rosa Diaz Tur, Silvia Jimenez, Carmen Obach, Victor Segura, Tomas Serrano-Heras, Gemma Chung, Jong-Won Roquer, Jaume Soriano-Tarraga, Carol Giralt-Steinhauer, Eva Mola-Caminal, Marina Pera, Joanna Lapicka-Bodzioch, Katarzyna Derbisz, Justyna Davalos, Antoni Lopez-Cancio, Elena Muñoz, Lucia Tatlisumak, Turgut Molina, Carlos Ribo, Marc Bustamante, Alejandro Sobrino, Tomas Castillo-Sanchez, Jose Campos, Francisco Rodriguez-Castro, Emilio Arias-Rivas, Susana Rodríguez-Yáñez, Manuel Herbosa, Christina Ford, Andria L. Arauz, Antonio Lopes-Cendes, Iscia Lowenkopf, Theodore Barboza, Miguel A. Amini, Hajar Stamova, Boryana Ander, Bradley P. Sharp, Frank R Kim, Gyeong Moon Bang, Oh Young Jimenez-Conde, Jordi Slowik, Agnieszka Stribian, Daniel Tsai, Ellen A. Burkly, Linda C. Montaner, Joan Fernandez-Cadenas, Israel Lee, Jin-Moo Cruchaga, Carlos MULTI-ANCESTRY GENETIC STUDY IN 5,876 PATIENTS IDENTIFIES AN ASSOCIATION BETWEEN EXCITOTOXIC GENES AND EARLY OUTCOMES AFTER ACUTE ISCHEMIC STROKE. |
title | MULTI-ANCESTRY GENETIC STUDY IN 5,876 PATIENTS IDENTIFIES AN ASSOCIATION BETWEEN EXCITOTOXIC GENES AND EARLY OUTCOMES AFTER ACUTE ISCHEMIC STROKE. |
title_full | MULTI-ANCESTRY GENETIC STUDY IN 5,876 PATIENTS IDENTIFIES AN ASSOCIATION BETWEEN EXCITOTOXIC GENES AND EARLY OUTCOMES AFTER ACUTE ISCHEMIC STROKE. |
title_fullStr | MULTI-ANCESTRY GENETIC STUDY IN 5,876 PATIENTS IDENTIFIES AN ASSOCIATION BETWEEN EXCITOTOXIC GENES AND EARLY OUTCOMES AFTER ACUTE ISCHEMIC STROKE. |
title_full_unstemmed | MULTI-ANCESTRY GENETIC STUDY IN 5,876 PATIENTS IDENTIFIES AN ASSOCIATION BETWEEN EXCITOTOXIC GENES AND EARLY OUTCOMES AFTER ACUTE ISCHEMIC STROKE. |
title_short | MULTI-ANCESTRY GENETIC STUDY IN 5,876 PATIENTS IDENTIFIES AN ASSOCIATION BETWEEN EXCITOTOXIC GENES AND EARLY OUTCOMES AFTER ACUTE ISCHEMIC STROKE. |
title_sort | multi-ancestry genetic study in 5,876 patients identifies an association between excitotoxic genes and early outcomes after acute ischemic stroke. |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7654887/ https://www.ncbi.nlm.nih.gov/pubmed/33173895 http://dx.doi.org/10.1101/2020.10.29.20222257 |
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