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An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma
Growing evidence suggests that the superiority of long noncoding RNAs (lncRNAs) and messenger RNAs (mRNAs) could act as biomarkers for cancer prognosis. However, the prognostic marker for hepatocellular carcinoma with high accuracy and sensitivity is still lacking. In this research, a retrospective,...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7655255/ https://www.ncbi.nlm.nih.gov/pubmed/33204302 http://dx.doi.org/10.1155/2020/8872329 |
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author | Zhu, Rui Guo, Wenna Xu, Xin-Jian Zhu, Liucun |
author_facet | Zhu, Rui Guo, Wenna Xu, Xin-Jian Zhu, Liucun |
author_sort | Zhu, Rui |
collection | PubMed |
description | Growing evidence suggests that the superiority of long noncoding RNAs (lncRNAs) and messenger RNAs (mRNAs) could act as biomarkers for cancer prognosis. However, the prognostic marker for hepatocellular carcinoma with high accuracy and sensitivity is still lacking. In this research, a retrospective, cohort-based study of genome-wide RNA-seq data of patients with hepatocellular carcinoma was carried out, and two protein-coding genes (GTPBP4, TREM-1) and one lncRNA (LINC00426) were sorted out to construct an integrative signature to predict the prognosis of patients. The results show that both the AUC and the C-index of this model perform well in TCGA validation dataset, cross-platform GEO validation dataset, and different subsets divided by gender, stage, and grade. The expression pattern and functional analysis show that all three genes contained in the model are associated with immune infiltration, cell proliferation, invasion, and metastasis, providing further confirmation of this model. In summary, the proposed model can effectively distinguish the high- and low-risk groups of hepatocellular carcinoma patients and is expected to shed light on the treatment of hepatocellular carcinoma and greatly improve the patients' prognosis. |
format | Online Article Text |
id | pubmed-7655255 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-76552552020-11-16 An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma Zhu, Rui Guo, Wenna Xu, Xin-Jian Zhu, Liucun Comput Math Methods Med Research Article Growing evidence suggests that the superiority of long noncoding RNAs (lncRNAs) and messenger RNAs (mRNAs) could act as biomarkers for cancer prognosis. However, the prognostic marker for hepatocellular carcinoma with high accuracy and sensitivity is still lacking. In this research, a retrospective, cohort-based study of genome-wide RNA-seq data of patients with hepatocellular carcinoma was carried out, and two protein-coding genes (GTPBP4, TREM-1) and one lncRNA (LINC00426) were sorted out to construct an integrative signature to predict the prognosis of patients. The results show that both the AUC and the C-index of this model perform well in TCGA validation dataset, cross-platform GEO validation dataset, and different subsets divided by gender, stage, and grade. The expression pattern and functional analysis show that all three genes contained in the model are associated with immune infiltration, cell proliferation, invasion, and metastasis, providing further confirmation of this model. In summary, the proposed model can effectively distinguish the high- and low-risk groups of hepatocellular carcinoma patients and is expected to shed light on the treatment of hepatocellular carcinoma and greatly improve the patients' prognosis. Hindawi 2020-11-03 /pmc/articles/PMC7655255/ /pubmed/33204302 http://dx.doi.org/10.1155/2020/8872329 Text en Copyright © 2020 Rui Zhu et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zhu, Rui Guo, Wenna Xu, Xin-Jian Zhu, Liucun An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma |
title | An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma |
title_full | An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma |
title_fullStr | An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma |
title_full_unstemmed | An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma |
title_short | An Integrating Immune-Related Signature to Improve Prognosis of Hepatocellular Carcinoma |
title_sort | integrating immune-related signature to improve prognosis of hepatocellular carcinoma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7655255/ https://www.ncbi.nlm.nih.gov/pubmed/33204302 http://dx.doi.org/10.1155/2020/8872329 |
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