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Construction of a risk signature for adrenocortical carcinoma using immune-related genes

BACKGROUND: Adrenocortical carcinoma (ACC) is considered a rare tumor with a dismal prognosis. Expression of immune-related genes (IRGs) in ACC and correlations between IRGs and ACC prognosis were assessed using The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases. METHODS:...

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Autores principales: Fu, Yang, Sun, Shanshan, Bi, Jianbin, Kong, Chuize
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7658150/
https://www.ncbi.nlm.nih.gov/pubmed/33209656
http://dx.doi.org/10.21037/tau-20-485
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author Fu, Yang
Sun, Shanshan
Bi, Jianbin
Kong, Chuize
author_facet Fu, Yang
Sun, Shanshan
Bi, Jianbin
Kong, Chuize
author_sort Fu, Yang
collection PubMed
description BACKGROUND: Adrenocortical carcinoma (ACC) is considered a rare tumor with a dismal prognosis. Expression of immune-related genes (IRGs) in ACC and correlations between IRGs and ACC prognosis were assessed using The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases. METHODS: To preliminarily predict immune cell infiltration, an immune score was calculated using ESTIMATE. Differentially expressed IRGs were screened, and potential biological functions were investigated. We then performed univariate Cox regression to identify IRGs associated with survival, and the regulatory mechanisms of IRGs associated with survival were predicted. We built a risk signature through multivariate Cox regression to evaluate patient overall survival (OS). RESULTS: A high immune score predicted a good prognosis and an early clinical stage in ACC. We identified 30 IRGs associated with survival and then predicted associated regulatory mechanisms via protein-protein interaction (PPI) and transcription factor (TF) regulatory networks. The risk signature established by multivariate Cox regression correlated significantly with prognosis in ACC. CONCLUSIONS: The vital roles of IRGs in ACC were assessed, and the risk signature obtained based on IRGs associated with survival independently predicted ACC prognosis.
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spelling pubmed-76581502020-11-17 Construction of a risk signature for adrenocortical carcinoma using immune-related genes Fu, Yang Sun, Shanshan Bi, Jianbin Kong, Chuize Transl Androl Urol Original Article BACKGROUND: Adrenocortical carcinoma (ACC) is considered a rare tumor with a dismal prognosis. Expression of immune-related genes (IRGs) in ACC and correlations between IRGs and ACC prognosis were assessed using The Cancer Genome Atlas (TCGA) and Genotype-Tissue Expression (GTEx) databases. METHODS: To preliminarily predict immune cell infiltration, an immune score was calculated using ESTIMATE. Differentially expressed IRGs were screened, and potential biological functions were investigated. We then performed univariate Cox regression to identify IRGs associated with survival, and the regulatory mechanisms of IRGs associated with survival were predicted. We built a risk signature through multivariate Cox regression to evaluate patient overall survival (OS). RESULTS: A high immune score predicted a good prognosis and an early clinical stage in ACC. We identified 30 IRGs associated with survival and then predicted associated regulatory mechanisms via protein-protein interaction (PPI) and transcription factor (TF) regulatory networks. The risk signature established by multivariate Cox regression correlated significantly with prognosis in ACC. CONCLUSIONS: The vital roles of IRGs in ACC were assessed, and the risk signature obtained based on IRGs associated with survival independently predicted ACC prognosis. AME Publishing Company 2020-10 /pmc/articles/PMC7658150/ /pubmed/33209656 http://dx.doi.org/10.21037/tau-20-485 Text en 2020 Translational Andrology and Urology. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Fu, Yang
Sun, Shanshan
Bi, Jianbin
Kong, Chuize
Construction of a risk signature for adrenocortical carcinoma using immune-related genes
title Construction of a risk signature for adrenocortical carcinoma using immune-related genes
title_full Construction of a risk signature for adrenocortical carcinoma using immune-related genes
title_fullStr Construction of a risk signature for adrenocortical carcinoma using immune-related genes
title_full_unstemmed Construction of a risk signature for adrenocortical carcinoma using immune-related genes
title_short Construction of a risk signature for adrenocortical carcinoma using immune-related genes
title_sort construction of a risk signature for adrenocortical carcinoma using immune-related genes
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7658150/
https://www.ncbi.nlm.nih.gov/pubmed/33209656
http://dx.doi.org/10.21037/tau-20-485
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