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HRRD: a manually-curated database about the regulatory relationship between HPV and host RNA

HPV (Human papilloma virus) is a kind of small double-stranded DNA viruses which is extremely associated with different cancers. The roles HPV plays in the host were gradually identified through the interaction between it (including its early genes) and host RNA. In recent years, increasing numbers...

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Autores principales: Yan, Bingqing, Zhang, Siwei, Yu, Siyang, Hussain, Sajjad, Liu, Tianyang, Wang, Bozhi, Dong, Xiaoyu, Ma, Fen, Wei, Lanlan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7658224/
https://www.ncbi.nlm.nih.gov/pubmed/33177631
http://dx.doi.org/10.1038/s41598-020-76719-6
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author Yan, Bingqing
Zhang, Siwei
Yu, Siyang
Hussain, Sajjad
Liu, Tianyang
Wang, Bozhi
Dong, Xiaoyu
Ma, Fen
Wei, Lanlan
author_facet Yan, Bingqing
Zhang, Siwei
Yu, Siyang
Hussain, Sajjad
Liu, Tianyang
Wang, Bozhi
Dong, Xiaoyu
Ma, Fen
Wei, Lanlan
author_sort Yan, Bingqing
collection PubMed
description HPV (Human papilloma virus) is a kind of small double-stranded DNA viruses which is extremely associated with different cancers. The roles HPV plays in the host were gradually identified through the interaction between it (including its early genes) and host RNA. In recent years, increasing numbers of studies in HPV-related cancers have been published showing the relationship between HPV and host RNA. Here, we present a database named HRRD, which contains the regulatory relationship between HPV and RNA (mRNA, miRNA and lncRNA). The information was extracted from 10,761 papers in PubMed (up to December 1st, 2019). In addition, the sequence map of HPV (198 genotypes) is also contained. HRRD was designed as a user-friendly web-based interface for data retrieval. It integrated the information of interaction between HPV and RNA, which reflects the relationship between HPV and host. We hope HRRD will further provide a comprehensive understanding of HPV in carcinogenesis and prognosis. HRRD is freely accessible at www.hmuhrrd.com/HRRD.
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spelling pubmed-76582242020-11-12 HRRD: a manually-curated database about the regulatory relationship between HPV and host RNA Yan, Bingqing Zhang, Siwei Yu, Siyang Hussain, Sajjad Liu, Tianyang Wang, Bozhi Dong, Xiaoyu Ma, Fen Wei, Lanlan Sci Rep Article HPV (Human papilloma virus) is a kind of small double-stranded DNA viruses which is extremely associated with different cancers. The roles HPV plays in the host were gradually identified through the interaction between it (including its early genes) and host RNA. In recent years, increasing numbers of studies in HPV-related cancers have been published showing the relationship between HPV and host RNA. Here, we present a database named HRRD, which contains the regulatory relationship between HPV and RNA (mRNA, miRNA and lncRNA). The information was extracted from 10,761 papers in PubMed (up to December 1st, 2019). In addition, the sequence map of HPV (198 genotypes) is also contained. HRRD was designed as a user-friendly web-based interface for data retrieval. It integrated the information of interaction between HPV and RNA, which reflects the relationship between HPV and host. We hope HRRD will further provide a comprehensive understanding of HPV in carcinogenesis and prognosis. HRRD is freely accessible at www.hmuhrrd.com/HRRD. Nature Publishing Group UK 2020-11-11 /pmc/articles/PMC7658224/ /pubmed/33177631 http://dx.doi.org/10.1038/s41598-020-76719-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Yan, Bingqing
Zhang, Siwei
Yu, Siyang
Hussain, Sajjad
Liu, Tianyang
Wang, Bozhi
Dong, Xiaoyu
Ma, Fen
Wei, Lanlan
HRRD: a manually-curated database about the regulatory relationship between HPV and host RNA
title HRRD: a manually-curated database about the regulatory relationship between HPV and host RNA
title_full HRRD: a manually-curated database about the regulatory relationship between HPV and host RNA
title_fullStr HRRD: a manually-curated database about the regulatory relationship between HPV and host RNA
title_full_unstemmed HRRD: a manually-curated database about the regulatory relationship between HPV and host RNA
title_short HRRD: a manually-curated database about the regulatory relationship between HPV and host RNA
title_sort hrrd: a manually-curated database about the regulatory relationship between hpv and host rna
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7658224/
https://www.ncbi.nlm.nih.gov/pubmed/33177631
http://dx.doi.org/10.1038/s41598-020-76719-6
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