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Prognostic Implication of a Metabolism-Associated Gene Signature in Lung Adenocarcinoma

Lung cancer is the most common cancer worldwide, leading to high mortality each year. Metabolic pathways play a vital role in the initiation and progression of lung cancer. We aimed to establish a prognostic prediction model for lung adenocarcinoma (LUAD) patients based on a metabolism-associated ge...

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Autores principales: He, Lulu, Chen, Jiaxian, Xu, Feng, Li, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society of Gene & Cell Therapy 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7658576/
https://www.ncbi.nlm.nih.gov/pubmed/33209981
http://dx.doi.org/10.1016/j.omto.2020.09.011
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author He, Lulu
Chen, Jiaxian
Xu, Feng
Li, Jun
Li, Jun
author_facet He, Lulu
Chen, Jiaxian
Xu, Feng
Li, Jun
Li, Jun
author_sort He, Lulu
collection PubMed
description Lung cancer is the most common cancer worldwide, leading to high mortality each year. Metabolic pathways play a vital role in the initiation and progression of lung cancer. We aimed to establish a prognostic prediction model for lung adenocarcinoma (LUAD) patients based on a metabolism-associated gene (MTG) signature. Differentially expressed (DE)-MTGs were screened from The Cancer Genome Atlas (TCGA) LUAD cohorts. Univariate Cox regression analysis was performed on these DE-MTGs to identify genes significantly correlated with prognosis. Least absolute shrinkage and selection operator (LASSO) regression was performed on the resulting genes to establish an optimal risk model. Survival analysis was used to assess the prognostic ability of the model. The prognostic value of the gene signature was further validated in independent Gene Expression Omnibus (GEO) datasets. A gene signature with 13 metabolic genes was identified as an independent prognostic factor. Kaplan-Meier survival analysis demonstrated the good performance of the risk model in both TCGA training and GEO validation cohorts. Finally, a nomogram incorporating clinical parameters and the metabolic gene signature was constructed to help individualize outcome predictions. The calibration curves showed excellent agreement between the actual and predicted survival.
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spelling pubmed-76585762020-11-17 Prognostic Implication of a Metabolism-Associated Gene Signature in Lung Adenocarcinoma He, Lulu Chen, Jiaxian Xu, Feng Li, Jun Li, Jun Mol Ther Oncolytics Original Article Lung cancer is the most common cancer worldwide, leading to high mortality each year. Metabolic pathways play a vital role in the initiation and progression of lung cancer. We aimed to establish a prognostic prediction model for lung adenocarcinoma (LUAD) patients based on a metabolism-associated gene (MTG) signature. Differentially expressed (DE)-MTGs were screened from The Cancer Genome Atlas (TCGA) LUAD cohorts. Univariate Cox regression analysis was performed on these DE-MTGs to identify genes significantly correlated with prognosis. Least absolute shrinkage and selection operator (LASSO) regression was performed on the resulting genes to establish an optimal risk model. Survival analysis was used to assess the prognostic ability of the model. The prognostic value of the gene signature was further validated in independent Gene Expression Omnibus (GEO) datasets. A gene signature with 13 metabolic genes was identified as an independent prognostic factor. Kaplan-Meier survival analysis demonstrated the good performance of the risk model in both TCGA training and GEO validation cohorts. Finally, a nomogram incorporating clinical parameters and the metabolic gene signature was constructed to help individualize outcome predictions. The calibration curves showed excellent agreement between the actual and predicted survival. American Society of Gene & Cell Therapy 2020-10-04 /pmc/articles/PMC7658576/ /pubmed/33209981 http://dx.doi.org/10.1016/j.omto.2020.09.011 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
He, Lulu
Chen, Jiaxian
Xu, Feng
Li, Jun
Li, Jun
Prognostic Implication of a Metabolism-Associated Gene Signature in Lung Adenocarcinoma
title Prognostic Implication of a Metabolism-Associated Gene Signature in Lung Adenocarcinoma
title_full Prognostic Implication of a Metabolism-Associated Gene Signature in Lung Adenocarcinoma
title_fullStr Prognostic Implication of a Metabolism-Associated Gene Signature in Lung Adenocarcinoma
title_full_unstemmed Prognostic Implication of a Metabolism-Associated Gene Signature in Lung Adenocarcinoma
title_short Prognostic Implication of a Metabolism-Associated Gene Signature in Lung Adenocarcinoma
title_sort prognostic implication of a metabolism-associated gene signature in lung adenocarcinoma
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7658576/
https://www.ncbi.nlm.nih.gov/pubmed/33209981
http://dx.doi.org/10.1016/j.omto.2020.09.011
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