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Reducing Results Variance in Lifespan Machines: An Analysis of the Influence of Vibrotaxis on Wild-Type Caenorhabditis elegans for the Death Criterion

Nowadays, various artificial vision-based machines automate the lifespan assays of C. elegans. These automated machines present wider variability in results than manual assays because in the latter worms can be poked one by one to determine whether they are alive or not. Lifespan machines normally u...

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Autores principales: Puchalt, Joan Carles, Layana Castro, Pablo E., Sánchez-Salmerón, Antonio-José
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660079/
https://www.ncbi.nlm.nih.gov/pubmed/33105730
http://dx.doi.org/10.3390/s20215981
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author Puchalt, Joan Carles
Layana Castro, Pablo E.
Sánchez-Salmerón, Antonio-José
author_facet Puchalt, Joan Carles
Layana Castro, Pablo E.
Sánchez-Salmerón, Antonio-José
author_sort Puchalt, Joan Carles
collection PubMed
description Nowadays, various artificial vision-based machines automate the lifespan assays of C. elegans. These automated machines present wider variability in results than manual assays because in the latter worms can be poked one by one to determine whether they are alive or not. Lifespan machines normally use a “dead or alive criterion” based on nematode position or pose changes, without poking worms. However, worms barely move on their last days of life, even though they are still alive. Therefore, a long monitoring period is necessary to observe motility in order to guarantee worms are actually dead, or a stimulus to prompt worm movement is required to reduce the lifespan variability measure. Here, a new automated vibrotaxis-based method for lifespan machines is proposed as a solution to prompt a motion response in all worms cultured on standard Petri plates in order to better distinguish between live and dead individuals. This simple automated method allows the stimulation of all animals through the whole plate at the same time and intensity, increasing the experiment throughput. The experimental results exhibited improved live-worm detection using this method, and most live nematodes (>93%) reacted to the vibration stimulus. This method increased machine sensitivity by decreasing results variance by approximately one half (from [Formula: see text] individual error per plate to [Formula: see text]) and error in lifespan curve was reduced as well (from [Formula: see text] to [Formula: see text]).
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spelling pubmed-76600792020-11-13 Reducing Results Variance in Lifespan Machines: An Analysis of the Influence of Vibrotaxis on Wild-Type Caenorhabditis elegans for the Death Criterion Puchalt, Joan Carles Layana Castro, Pablo E. Sánchez-Salmerón, Antonio-José Sensors (Basel) Article Nowadays, various artificial vision-based machines automate the lifespan assays of C. elegans. These automated machines present wider variability in results than manual assays because in the latter worms can be poked one by one to determine whether they are alive or not. Lifespan machines normally use a “dead or alive criterion” based on nematode position or pose changes, without poking worms. However, worms barely move on their last days of life, even though they are still alive. Therefore, a long monitoring period is necessary to observe motility in order to guarantee worms are actually dead, or a stimulus to prompt worm movement is required to reduce the lifespan variability measure. Here, a new automated vibrotaxis-based method for lifespan machines is proposed as a solution to prompt a motion response in all worms cultured on standard Petri plates in order to better distinguish between live and dead individuals. This simple automated method allows the stimulation of all animals through the whole plate at the same time and intensity, increasing the experiment throughput. The experimental results exhibited improved live-worm detection using this method, and most live nematodes (>93%) reacted to the vibration stimulus. This method increased machine sensitivity by decreasing results variance by approximately one half (from [Formula: see text] individual error per plate to [Formula: see text]) and error in lifespan curve was reduced as well (from [Formula: see text] to [Formula: see text]). MDPI 2020-10-22 /pmc/articles/PMC7660079/ /pubmed/33105730 http://dx.doi.org/10.3390/s20215981 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Puchalt, Joan Carles
Layana Castro, Pablo E.
Sánchez-Salmerón, Antonio-José
Reducing Results Variance in Lifespan Machines: An Analysis of the Influence of Vibrotaxis on Wild-Type Caenorhabditis elegans for the Death Criterion
title Reducing Results Variance in Lifespan Machines: An Analysis of the Influence of Vibrotaxis on Wild-Type Caenorhabditis elegans for the Death Criterion
title_full Reducing Results Variance in Lifespan Machines: An Analysis of the Influence of Vibrotaxis on Wild-Type Caenorhabditis elegans for the Death Criterion
title_fullStr Reducing Results Variance in Lifespan Machines: An Analysis of the Influence of Vibrotaxis on Wild-Type Caenorhabditis elegans for the Death Criterion
title_full_unstemmed Reducing Results Variance in Lifespan Machines: An Analysis of the Influence of Vibrotaxis on Wild-Type Caenorhabditis elegans for the Death Criterion
title_short Reducing Results Variance in Lifespan Machines: An Analysis of the Influence of Vibrotaxis on Wild-Type Caenorhabditis elegans for the Death Criterion
title_sort reducing results variance in lifespan machines: an analysis of the influence of vibrotaxis on wild-type caenorhabditis elegans for the death criterion
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660079/
https://www.ncbi.nlm.nih.gov/pubmed/33105730
http://dx.doi.org/10.3390/s20215981
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