Spectral Jaccard Similarity: A New Approach to Estimating Pairwise Sequence Alignments

Pairwise sequence alignment is often a computational bottleneck in genomic analysis pipelines, particularly in the context of third-generation sequencing technologies. To speed up this process, the pairwise k-mer Jaccard similarity is sometimes used as a proxy for alignment size in order to filter p...

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Detalles Bibliográficos
Autores principales: Baharav, Tavor Z., Kamath, Govinda M., Tse, David N., Shomorony, Ilan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660437/
https://www.ncbi.nlm.nih.gov/pubmed/33205128
http://dx.doi.org/10.1016/j.patter.2020.100081

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660437/
https://www.ncbi.nlm.nih.gov/pubmed/33205128
http://dx.doi.org/10.1016/j.patter.2020.100081

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