The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems

Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR principles, data, labels, and metadata must use controlled vocabularies and onto...

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Autores principales: Arnaud, Elizabeth, Laporte, Marie-Angélique, Kim, Soonho, Aubert, Céline, Leonelli, Sabina, Miro, Berta, Cooper, Laurel, Jaiswal, Pankaj, Kruseman, Gideon, Shrestha, Rosemary, Buttigieg, Pier Luigi, Mungall, Christopher J., Pietragalla, Julian, Agbona, Afolabi, Muliro, Jacqueline, Detras, Jeffrey, Hualla, Vilma, Rathore, Abhishek, Das, Roma Rani, Dieng, Ibnou, Bauchet, Guillaume, Menda, Naama, Pommier, Cyril, Shaw, Felix, Lyon, David, Mwanzia, Leroy, Juarez, Henry, Bonaiuti, Enrico, Chiputwa, Brian, Obileye, Olatunbosun, Auzoux, Sandrine, Yeumo, Esther Dzalé, Mueller, Lukas A., Silverstein, Kevin, Lafargue, Alexandra, Antezana, Erick, Devare, Medha, King, Brian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Descriptor
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660444/
https://www.ncbi.nlm.nih.gov/pubmed/33205138
http://dx.doi.org/10.1016/j.patter.2020.100105
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author Arnaud, Elizabeth
Laporte, Marie-Angélique
Kim, Soonho
Aubert, Céline
Leonelli, Sabina
Miro, Berta
Cooper, Laurel
Jaiswal, Pankaj
Kruseman, Gideon
Shrestha, Rosemary
Buttigieg, Pier Luigi
Mungall, Christopher J.
Pietragalla, Julian
Agbona, Afolabi
Muliro, Jacqueline
Detras, Jeffrey
Hualla, Vilma
Rathore, Abhishek
Das, Roma Rani
Dieng, Ibnou
Bauchet, Guillaume
Menda, Naama
Pommier, Cyril
Shaw, Felix
Lyon, David
Mwanzia, Leroy
Juarez, Henry
Bonaiuti, Enrico
Chiputwa, Brian
Obileye, Olatunbosun
Auzoux, Sandrine
Yeumo, Esther Dzalé
Mueller, Lukas A.
Silverstein, Kevin
Lafargue, Alexandra
Antezana, Erick
Devare, Medha
King, Brian
author_facet Arnaud, Elizabeth
Laporte, Marie-Angélique
Kim, Soonho
Aubert, Céline
Leonelli, Sabina
Miro, Berta
Cooper, Laurel
Jaiswal, Pankaj
Kruseman, Gideon
Shrestha, Rosemary
Buttigieg, Pier Luigi
Mungall, Christopher J.
Pietragalla, Julian
Agbona, Afolabi
Muliro, Jacqueline
Detras, Jeffrey
Hualla, Vilma
Rathore, Abhishek
Das, Roma Rani
Dieng, Ibnou
Bauchet, Guillaume
Menda, Naama
Pommier, Cyril
Shaw, Felix
Lyon, David
Mwanzia, Leroy
Juarez, Henry
Bonaiuti, Enrico
Chiputwa, Brian
Obileye, Olatunbosun
Auzoux, Sandrine
Yeumo, Esther Dzalé
Mueller, Lukas A.
Silverstein, Kevin
Lafargue, Alexandra
Antezana, Erick
Devare, Medha
King, Brian
author_sort Arnaud, Elizabeth
collection PubMed
description Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR principles, data, labels, and metadata must use controlled vocabularies and ontologies that are popular in the knowledge domain and commonly used by the community. Despite the existence of robust ontologies in the Life Sciences, there is currently no comprehensive full set of ontologies recommended for data annotation across agricultural research disciplines. In this paper, we discuss the added value of the Ontologies Community of Practice (CoP) of the CGIAR Platform for Big Data in Agriculture for harnessing relevant expertise in ontology development and identifying innovative solutions that support quality data annotation. The Ontologies CoP stimulates knowledge sharing among stakeholders, such as researchers, data managers, domain experts, experts in ontology design, and platform development teams.
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spelling pubmed-76604442020-11-16 The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems Arnaud, Elizabeth Laporte, Marie-Angélique Kim, Soonho Aubert, Céline Leonelli, Sabina Miro, Berta Cooper, Laurel Jaiswal, Pankaj Kruseman, Gideon Shrestha, Rosemary Buttigieg, Pier Luigi Mungall, Christopher J. Pietragalla, Julian Agbona, Afolabi Muliro, Jacqueline Detras, Jeffrey Hualla, Vilma Rathore, Abhishek Das, Roma Rani Dieng, Ibnou Bauchet, Guillaume Menda, Naama Pommier, Cyril Shaw, Felix Lyon, David Mwanzia, Leroy Juarez, Henry Bonaiuti, Enrico Chiputwa, Brian Obileye, Olatunbosun Auzoux, Sandrine Yeumo, Esther Dzalé Mueller, Lukas A. Silverstein, Kevin Lafargue, Alexandra Antezana, Erick Devare, Medha King, Brian Patterns (N Y) Descriptor Heterogeneous and multidisciplinary data generated by research on sustainable global agriculture and agrifood systems requires quality data labeling or annotation in order to be interoperable. As recommended by the FAIR principles, data, labels, and metadata must use controlled vocabularies and ontologies that are popular in the knowledge domain and commonly used by the community. Despite the existence of robust ontologies in the Life Sciences, there is currently no comprehensive full set of ontologies recommended for data annotation across agricultural research disciplines. In this paper, we discuss the added value of the Ontologies Community of Practice (CoP) of the CGIAR Platform for Big Data in Agriculture for harnessing relevant expertise in ontology development and identifying innovative solutions that support quality data annotation. The Ontologies CoP stimulates knowledge sharing among stakeholders, such as researchers, data managers, domain experts, experts in ontology design, and platform development teams. Elsevier 2020-09-25 /pmc/articles/PMC7660444/ /pubmed/33205138 http://dx.doi.org/10.1016/j.patter.2020.100105 Text en © 2020. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Descriptor
Arnaud, Elizabeth
Laporte, Marie-Angélique
Kim, Soonho
Aubert, Céline
Leonelli, Sabina
Miro, Berta
Cooper, Laurel
Jaiswal, Pankaj
Kruseman, Gideon
Shrestha, Rosemary
Buttigieg, Pier Luigi
Mungall, Christopher J.
Pietragalla, Julian
Agbona, Afolabi
Muliro, Jacqueline
Detras, Jeffrey
Hualla, Vilma
Rathore, Abhishek
Das, Roma Rani
Dieng, Ibnou
Bauchet, Guillaume
Menda, Naama
Pommier, Cyril
Shaw, Felix
Lyon, David
Mwanzia, Leroy
Juarez, Henry
Bonaiuti, Enrico
Chiputwa, Brian
Obileye, Olatunbosun
Auzoux, Sandrine
Yeumo, Esther Dzalé
Mueller, Lukas A.
Silverstein, Kevin
Lafargue, Alexandra
Antezana, Erick
Devare, Medha
King, Brian
The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems
title The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems
title_full The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems
title_fullStr The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems
title_full_unstemmed The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems
title_short The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems
title_sort ontologies community of practice: a cgiar initiative for big data in agrifood systems
topic Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660444/
https://www.ncbi.nlm.nih.gov/pubmed/33205138
http://dx.doi.org/10.1016/j.patter.2020.100105
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