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Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis

The taxonomic positions of two novel aerobic, Gram-stain-positive Actinobacteria, designated RB20(T) and RB56(T), were determined using a polyphasic approach. Both were isolated from the fungus-farming termite Macrotermes natalensis. Results of 16S rRNA gene sequence analysis revealed that both stra...

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Autores principales: Benndorf, René, Schwitalla, Jan W., Martin, Karin, de Beer, Z. Wilhelm, Vollmers, John, Kaster, Anne-Kristin, Poulsen, Michael, Beemelmanns, Christine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660896/
https://www.ncbi.nlm.nih.gov/pubmed/32815801
http://dx.doi.org/10.1099/ijsem.0.004398
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author Benndorf, René
Schwitalla, Jan W.
Martin, Karin
de Beer, Z. Wilhelm
Vollmers, John
Kaster, Anne-Kristin
Poulsen, Michael
Beemelmanns, Christine
author_facet Benndorf, René
Schwitalla, Jan W.
Martin, Karin
de Beer, Z. Wilhelm
Vollmers, John
Kaster, Anne-Kristin
Poulsen, Michael
Beemelmanns, Christine
author_sort Benndorf, René
collection PubMed
description The taxonomic positions of two novel aerobic, Gram-stain-positive Actinobacteria, designated RB20(T) and RB56(T), were determined using a polyphasic approach. Both were isolated from the fungus-farming termite Macrotermes natalensis. Results of 16S rRNA gene sequence analysis revealed that both strains are members of the genus Nocardia with the closest phylogenetic neighbours Nocardia miyunensis JCM12860(T) (98.9 %) and Nocardia nova DSM44481(T) (98.5 %) for RB20(T) and Nocardia takedensis DSM 44801(T) (98.3 %), Nocardia pseudobrasiliensis DSM 44290(T) (98.3 %) and Nocardia rayongensis JCM 19832(T) (98.2 %) for RB56(T). Digital DNA–DNA hybridization (DDH) between RB20(T) and N. miyunensis JCM12860(T) and N. nova DSM 44481(T) resulted in similarity values of 33.9 and 22.0 %, respectively. DDH between RB56(T) and N. takedensis DSM44801(T) and N. pseudobrasiliensis DSM44290(T) showed similarity values of 20.7 and 22.3 %, respectively. In addition, wet-lab DDH between RB56(T) and N. rayongensis JCM19832(T) resulted in 10.2 % (14.5 %) similarity. Both strains showed morphological and chemotaxonomic features typical for the genus Nocardia , such as the presence of meso-diaminopimelic acid (A(2)pm) within the cell wall, arabinose and galactose as major sugar components within whole cell-wall hydrolysates, the presence of mycolic acids and major phospholipids (diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol), and the predominant menaquinone MK-8 (H(4), ω-cyclo). The main fatty acids for both strains were hexadecanoic acid (C(16 : 0)), 10-methyloctadecanoic acid (10-methyl C(18 : 0)) and cis-9-octadecenoic acid (C(18 : 1) ω9c). We propose two novel species within the genus Nocardia : Nocardia macrotermitis sp. nov. with the type strain RB20(T) (=VKM Ac-2841(T)=NRRL B65541(T)) and Nocardia aurantia sp. nov. with the type strain RB56(T) (=VKM Ac-2842(T)=NRRL B65542(T)).
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spelling pubmed-76608962020-11-13 Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis Benndorf, René Schwitalla, Jan W. Martin, Karin de Beer, Z. Wilhelm Vollmers, John Kaster, Anne-Kristin Poulsen, Michael Beemelmanns, Christine Int J Syst Evol Microbiol Taxonomic Description The taxonomic positions of two novel aerobic, Gram-stain-positive Actinobacteria, designated RB20(T) and RB56(T), were determined using a polyphasic approach. Both were isolated from the fungus-farming termite Macrotermes natalensis. Results of 16S rRNA gene sequence analysis revealed that both strains are members of the genus Nocardia with the closest phylogenetic neighbours Nocardia miyunensis JCM12860(T) (98.9 %) and Nocardia nova DSM44481(T) (98.5 %) for RB20(T) and Nocardia takedensis DSM 44801(T) (98.3 %), Nocardia pseudobrasiliensis DSM 44290(T) (98.3 %) and Nocardia rayongensis JCM 19832(T) (98.2 %) for RB56(T). Digital DNA–DNA hybridization (DDH) between RB20(T) and N. miyunensis JCM12860(T) and N. nova DSM 44481(T) resulted in similarity values of 33.9 and 22.0 %, respectively. DDH between RB56(T) and N. takedensis DSM44801(T) and N. pseudobrasiliensis DSM44290(T) showed similarity values of 20.7 and 22.3 %, respectively. In addition, wet-lab DDH between RB56(T) and N. rayongensis JCM19832(T) resulted in 10.2 % (14.5 %) similarity. Both strains showed morphological and chemotaxonomic features typical for the genus Nocardia , such as the presence of meso-diaminopimelic acid (A(2)pm) within the cell wall, arabinose and galactose as major sugar components within whole cell-wall hydrolysates, the presence of mycolic acids and major phospholipids (diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol), and the predominant menaquinone MK-8 (H(4), ω-cyclo). The main fatty acids for both strains were hexadecanoic acid (C(16 : 0)), 10-methyloctadecanoic acid (10-methyl C(18 : 0)) and cis-9-octadecenoic acid (C(18 : 1) ω9c). We propose two novel species within the genus Nocardia : Nocardia macrotermitis sp. nov. with the type strain RB20(T) (=VKM Ac-2841(T)=NRRL B65541(T)) and Nocardia aurantia sp. nov. with the type strain RB56(T) (=VKM Ac-2842(T)=NRRL B65542(T)). Microbiology Society 2020-10 2020-08-20 /pmc/articles/PMC7660896/ /pubmed/32815801 http://dx.doi.org/10.1099/ijsem.0.004398 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License.
spellingShingle Taxonomic Description
Benndorf, René
Schwitalla, Jan W.
Martin, Karin
de Beer, Z. Wilhelm
Vollmers, John
Kaster, Anne-Kristin
Poulsen, Michael
Beemelmanns, Christine
Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis
title Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis
title_full Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis
title_fullStr Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis
title_full_unstemmed Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis
title_short Nocardia macrotermitis sp. nov. and Nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite Macrotermes natalensis
title_sort nocardia macrotermitis sp. nov. and nocardia aurantia sp. nov., isolated from the gut of the fungus-growing termite macrotermes natalensis
topic Taxonomic Description
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660896/
https://www.ncbi.nlm.nih.gov/pubmed/32815801
http://dx.doi.org/10.1099/ijsem.0.004398
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