Cargando…

Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis

The taxonomic positions of two novel aerobic, Gram-positive actinobacteria, designated strains RB29(T) and RB68(T), were determined using a polyphasic approach. Based on 16S rRNA gene sequence analysis, the closest phylogenetic neighbours of RB29(T) were identified as Actinomadura rayongensis DSM 10...

Descripción completa

Detalles Bibliográficos
Autores principales: Benndorf, René, Martin, Karin, Küfner, Michelle, de Beer, Z. Wilhelm, Vollmers, John, Kaster, Anne-Kristin, Beemelmanns, Christine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660899/
https://www.ncbi.nlm.nih.gov/pubmed/32845828
http://dx.doi.org/10.1099/ijsem.0.004403
_version_ 1783609108030554112
author Benndorf, René
Martin, Karin
Küfner, Michelle
de Beer, Z. Wilhelm
Vollmers, John
Kaster, Anne-Kristin
Beemelmanns, Christine
author_facet Benndorf, René
Martin, Karin
Küfner, Michelle
de Beer, Z. Wilhelm
Vollmers, John
Kaster, Anne-Kristin
Beemelmanns, Christine
author_sort Benndorf, René
collection PubMed
description The taxonomic positions of two novel aerobic, Gram-positive actinobacteria, designated strains RB29(T) and RB68(T), were determined using a polyphasic approach. Based on 16S rRNA gene sequence analysis, the closest phylogenetic neighbours of RB29(T) were identified as Actinomadura rayongensis DSM 102126(T) (99.2 % similarity) and Actinomadura atramentaria DSM 43919(T) (98.7 %), and for strain RB68(T) was Actinomadura hibisca DSM 44148(T) (98.3 %). Digital DNA–DNA hybridization (dDDH) between RB29(T) and its closest phylogenetic neighbours, A. rayongensis DSM 102126(T) and A. atramentaria DSM 43919(T), resulted in similarity values of 53.2 % (50.6–55.9 %) and 26.4 % (24.1–28.9 %), respectively. Additionally, the average nucleotide identity (ANI) was 93.2 % (94.0 %) for A. rayongensis DSM 102126(T) and 82.3 % (78.9 %) for A. atramentaria DSM 43919(T). dDDH analysis between strain RB68(T) and A. hibisca DSM 44148(T) gave a similarity value of 24.5 % (22.2–27.0 %). Both strains, RB29(T) and RB68(T), revealed morphological characteristics and chemotaxonomic features typical for the genus Actinomadura , such as the presence of meso-diaminopimelic acid in the cell wall, galactose and glucose as major sugar components within whole-cell hydrolysates and the absence of mycolic acids. The major phospholipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannoside. Predominant menaquinones were MK-9(H(6)) and MK-9(H(8)) for RB29(T) and MK-9(H(4)) and MK-9(H(6)) for RB68(T). The main fatty acids were identified as 10-methyloctadecanoic acid (10-methyl C(18:0)), 14-methylpentadecanoic acid (iso-C(16:0)), hexadecanoic acid (C(16:0)) and cis-9-octadecanoic acid (C(18 : 1 )ω9c). Here, we propose two novel species of the genus Actinomadura : Actinomadura rubteroloni sp. nov. with the type strain RB29(T) (=CCUG 72668(T)=NRRL B-65537(T)) and Actinomadura macrotermitis sp. nov. with the type strain RB68(T) (=CCUG 72669(T)=NRRL B-65538(T)).
format Online
Article
Text
id pubmed-7660899
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Microbiology Society
record_format MEDLINE/PubMed
spelling pubmed-76608992020-11-13 Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis Benndorf, René Martin, Karin Küfner, Michelle de Beer, Z. Wilhelm Vollmers, John Kaster, Anne-Kristin Beemelmanns, Christine Int J Syst Evol Microbiol Taxonomic Description The taxonomic positions of two novel aerobic, Gram-positive actinobacteria, designated strains RB29(T) and RB68(T), were determined using a polyphasic approach. Based on 16S rRNA gene sequence analysis, the closest phylogenetic neighbours of RB29(T) were identified as Actinomadura rayongensis DSM 102126(T) (99.2 % similarity) and Actinomadura atramentaria DSM 43919(T) (98.7 %), and for strain RB68(T) was Actinomadura hibisca DSM 44148(T) (98.3 %). Digital DNA–DNA hybridization (dDDH) between RB29(T) and its closest phylogenetic neighbours, A. rayongensis DSM 102126(T) and A. atramentaria DSM 43919(T), resulted in similarity values of 53.2 % (50.6–55.9 %) and 26.4 % (24.1–28.9 %), respectively. Additionally, the average nucleotide identity (ANI) was 93.2 % (94.0 %) for A. rayongensis DSM 102126(T) and 82.3 % (78.9 %) for A. atramentaria DSM 43919(T). dDDH analysis between strain RB68(T) and A. hibisca DSM 44148(T) gave a similarity value of 24.5 % (22.2–27.0 %). Both strains, RB29(T) and RB68(T), revealed morphological characteristics and chemotaxonomic features typical for the genus Actinomadura , such as the presence of meso-diaminopimelic acid in the cell wall, galactose and glucose as major sugar components within whole-cell hydrolysates and the absence of mycolic acids. The major phospholipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannoside. Predominant menaquinones were MK-9(H(6)) and MK-9(H(8)) for RB29(T) and MK-9(H(4)) and MK-9(H(6)) for RB68(T). The main fatty acids were identified as 10-methyloctadecanoic acid (10-methyl C(18:0)), 14-methylpentadecanoic acid (iso-C(16:0)), hexadecanoic acid (C(16:0)) and cis-9-octadecanoic acid (C(18 : 1 )ω9c). Here, we propose two novel species of the genus Actinomadura : Actinomadura rubteroloni sp. nov. with the type strain RB29(T) (=CCUG 72668(T)=NRRL B-65537(T)) and Actinomadura macrotermitis sp. nov. with the type strain RB68(T) (=CCUG 72669(T)=NRRL B-65538(T)). Microbiology Society 2020-10 2020-08-26 /pmc/articles/PMC7660899/ /pubmed/32845828 http://dx.doi.org/10.1099/ijsem.0.004403 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution NonCommercial License.
spellingShingle Taxonomic Description
Benndorf, René
Martin, Karin
Küfner, Michelle
de Beer, Z. Wilhelm
Vollmers, John
Kaster, Anne-Kristin
Beemelmanns, Christine
Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis
title Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis
title_full Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis
title_fullStr Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis
title_full_unstemmed Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis
title_short Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis
title_sort actinomadura rubteroloni sp. nov. and actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite macrotermes natalensis
topic Taxonomic Description
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660899/
https://www.ncbi.nlm.nih.gov/pubmed/32845828
http://dx.doi.org/10.1099/ijsem.0.004403
work_keys_str_mv AT benndorfrene actinomadurarubterolonispnovandactinomaduramacrotermitisspnovisolatedfromthegutofthefungusgrowingtermitemacrotermesnatalensis
AT martinkarin actinomadurarubterolonispnovandactinomaduramacrotermitisspnovisolatedfromthegutofthefungusgrowingtermitemacrotermesnatalensis
AT kufnermichelle actinomadurarubterolonispnovandactinomaduramacrotermitisspnovisolatedfromthegutofthefungusgrowingtermitemacrotermesnatalensis
AT debeerzwilhelm actinomadurarubterolonispnovandactinomaduramacrotermitisspnovisolatedfromthegutofthefungusgrowingtermitemacrotermesnatalensis
AT vollmersjohn actinomadurarubterolonispnovandactinomaduramacrotermitisspnovisolatedfromthegutofthefungusgrowingtermitemacrotermesnatalensis
AT kasterannekristin actinomadurarubterolonispnovandactinomaduramacrotermitisspnovisolatedfromthegutofthefungusgrowingtermitemacrotermesnatalensis
AT beemelmannschristine actinomadurarubterolonispnovandactinomaduramacrotermitisspnovisolatedfromthegutofthefungusgrowingtermitemacrotermesnatalensis