Cargando…

Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word

OBJECTIVES: To enhance reproducible research by creating a broadly accessible, free, open-source software tool for connecting Microsoft Word to statistical programs (R/R Markdown, Python, SAS, Stata) so that results may be automatically updated in a manuscript. MATERIALS AND METHODS: We developed St...

Descripción completa

Detalles Bibliográficos
Autores principales: Welty, Leah J, Rasmussen, Luke V, Baldridge, Abigail S, Whitley, Eric W
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660954/
https://www.ncbi.nlm.nih.gov/pubmed/33215069
http://dx.doi.org/10.1093/jamiaopen/ooaa043
_version_ 1783609120540065792
author Welty, Leah J
Rasmussen, Luke V
Baldridge, Abigail S
Whitley, Eric W
author_facet Welty, Leah J
Rasmussen, Luke V
Baldridge, Abigail S
Whitley, Eric W
author_sort Welty, Leah J
collection PubMed
description OBJECTIVES: To enhance reproducible research by creating a broadly accessible, free, open-source software tool for connecting Microsoft Word to statistical programs (R/R Markdown, Python, SAS, Stata) so that results may be automatically updated in a manuscript. MATERIALS AND METHODS: We developed StatTag for Windows as a Microsoft Word plug-in using C# and for macOS as a native application using Objective-C. Source code is available under the MIT license at https://github.com/stattag. RESULTS: StatTag links analysis file(s) (R/R Markdown, SAS, Stata, or Python) and a Word document, invokes the statistical program(s) to obtain results, and embeds selected output in the document. StatTag can accommodate multiple statistical programs with a single document and features an interface to view, edit, and rerun statistical code directly from Word. DISCUSSION AND CONCLUSION: StatTag may facilitate reproducibility within increasingly multidisciplinary research teams, improve research transparency through review and publication, and complement data-sharing initiatives.
format Online
Article
Text
id pubmed-7660954
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-76609542020-11-18 Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word Welty, Leah J Rasmussen, Luke V Baldridge, Abigail S Whitley, Eric W JAMIA Open Application Notes OBJECTIVES: To enhance reproducible research by creating a broadly accessible, free, open-source software tool for connecting Microsoft Word to statistical programs (R/R Markdown, Python, SAS, Stata) so that results may be automatically updated in a manuscript. MATERIALS AND METHODS: We developed StatTag for Windows as a Microsoft Word plug-in using C# and for macOS as a native application using Objective-C. Source code is available under the MIT license at https://github.com/stattag. RESULTS: StatTag links analysis file(s) (R/R Markdown, SAS, Stata, or Python) and a Word document, invokes the statistical program(s) to obtain results, and embeds selected output in the document. StatTag can accommodate multiple statistical programs with a single document and features an interface to view, edit, and rerun statistical code directly from Word. DISCUSSION AND CONCLUSION: StatTag may facilitate reproducibility within increasingly multidisciplinary research teams, improve research transparency through review and publication, and complement data-sharing initiatives. Oxford University Press 2020-11-06 /pmc/articles/PMC7660954/ /pubmed/33215069 http://dx.doi.org/10.1093/jamiaopen/ooaa043 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Notes
Welty, Leah J
Rasmussen, Luke V
Baldridge, Abigail S
Whitley, Eric W
Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word
title Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word
title_full Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word
title_fullStr Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word
title_full_unstemmed Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word
title_short Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word
title_sort facilitating reproducible research through direct connection of data analysis with manuscript preparation: stattag for connecting statistical software to microsoft word
topic Application Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660954/
https://www.ncbi.nlm.nih.gov/pubmed/33215069
http://dx.doi.org/10.1093/jamiaopen/ooaa043
work_keys_str_mv AT weltyleahj facilitatingreproducibleresearchthroughdirectconnectionofdataanalysiswithmanuscriptpreparationstattagforconnectingstatisticalsoftwaretomicrosoftword
AT rasmussenlukev facilitatingreproducibleresearchthroughdirectconnectionofdataanalysiswithmanuscriptpreparationstattagforconnectingstatisticalsoftwaretomicrosoftword
AT baldridgeabigails facilitatingreproducibleresearchthroughdirectconnectionofdataanalysiswithmanuscriptpreparationstattagforconnectingstatisticalsoftwaretomicrosoftword
AT whitleyericw facilitatingreproducibleresearchthroughdirectconnectionofdataanalysiswithmanuscriptpreparationstattagforconnectingstatisticalsoftwaretomicrosoftword