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Predictive article recommendation using natural language processing and machine learning to support evidence updates in domain-specific knowledge graphs
OBJECTIVES: Describe an augmented intelligence approach to facilitate the update of evidence for associations in knowledge graphs. METHODS: New publications are filtered through multiple machine learning study classifiers, and filtered publications are combined with articles already included as evid...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660962/ https://www.ncbi.nlm.nih.gov/pubmed/33215067 http://dx.doi.org/10.1093/jamiaopen/ooaa028 |
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author | Sharma, Bhuvan Willis, Van C Huettner, Claudia S Beaty, Kirk Snowdon, Jane L Xue, Shang South, Brett R Jackson, Gretchen P Weeraratne, Dilhan Michelini, Vanessa |
author_facet | Sharma, Bhuvan Willis, Van C Huettner, Claudia S Beaty, Kirk Snowdon, Jane L Xue, Shang South, Brett R Jackson, Gretchen P Weeraratne, Dilhan Michelini, Vanessa |
author_sort | Sharma, Bhuvan |
collection | PubMed |
description | OBJECTIVES: Describe an augmented intelligence approach to facilitate the update of evidence for associations in knowledge graphs. METHODS: New publications are filtered through multiple machine learning study classifiers, and filtered publications are combined with articles already included as evidence in the knowledge graph. The corpus is then subjected to named entity recognition, semantic dictionary mapping, term vector space modeling, pairwise similarity, and focal entity match to identify highly related publications. Subject matter experts review recommended articles to assess inclusion in the knowledge graph; discrepancies are resolved by consensus. RESULTS: Study classifiers achieved F-scores from 0.88 to 0.94, and similarity thresholds for each study type were determined by experimentation. Our approach reduces human literature review load by 99%, and over the past 12 months, 41% of recommendations were accepted to update the knowledge graph. CONCLUSION: Integrated search and recommendation exploiting current evidence in a knowledge graph is useful for reducing human cognition load. |
format | Online Article Text |
id | pubmed-7660962 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-76609622020-11-18 Predictive article recommendation using natural language processing and machine learning to support evidence updates in domain-specific knowledge graphs Sharma, Bhuvan Willis, Van C Huettner, Claudia S Beaty, Kirk Snowdon, Jane L Xue, Shang South, Brett R Jackson, Gretchen P Weeraratne, Dilhan Michelini, Vanessa JAMIA Open Brief Communications OBJECTIVES: Describe an augmented intelligence approach to facilitate the update of evidence for associations in knowledge graphs. METHODS: New publications are filtered through multiple machine learning study classifiers, and filtered publications are combined with articles already included as evidence in the knowledge graph. The corpus is then subjected to named entity recognition, semantic dictionary mapping, term vector space modeling, pairwise similarity, and focal entity match to identify highly related publications. Subject matter experts review recommended articles to assess inclusion in the knowledge graph; discrepancies are resolved by consensus. RESULTS: Study classifiers achieved F-scores from 0.88 to 0.94, and similarity thresholds for each study type were determined by experimentation. Our approach reduces human literature review load by 99%, and over the past 12 months, 41% of recommendations were accepted to update the knowledge graph. CONCLUSION: Integrated search and recommendation exploiting current evidence in a knowledge graph is useful for reducing human cognition load. Oxford University Press 2020-09-29 /pmc/articles/PMC7660962/ /pubmed/33215067 http://dx.doi.org/10.1093/jamiaopen/ooaa028 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Brief Communications Sharma, Bhuvan Willis, Van C Huettner, Claudia S Beaty, Kirk Snowdon, Jane L Xue, Shang South, Brett R Jackson, Gretchen P Weeraratne, Dilhan Michelini, Vanessa Predictive article recommendation using natural language processing and machine learning to support evidence updates in domain-specific knowledge graphs |
title | Predictive article recommendation using natural language processing and machine learning to support evidence updates in domain-specific knowledge graphs |
title_full | Predictive article recommendation using natural language processing and machine learning to support evidence updates in domain-specific knowledge graphs |
title_fullStr | Predictive article recommendation using natural language processing and machine learning to support evidence updates in domain-specific knowledge graphs |
title_full_unstemmed | Predictive article recommendation using natural language processing and machine learning to support evidence updates in domain-specific knowledge graphs |
title_short | Predictive article recommendation using natural language processing and machine learning to support evidence updates in domain-specific knowledge graphs |
title_sort | predictive article recommendation using natural language processing and machine learning to support evidence updates in domain-specific knowledge graphs |
topic | Brief Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7660962/ https://www.ncbi.nlm.nih.gov/pubmed/33215067 http://dx.doi.org/10.1093/jamiaopen/ooaa028 |
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