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Admissible dissimilarity value (ADV) as a measure of subsampling reliability: case study North Sea cod (Gadus morhua)

The shape of the length frequency distribution (LFD) is an important input for stock assessments and one of the most important features in studies of fish population dynamics, providing estimates of growth parameters. In practice, oversampling may occur when sampling commercially important species....

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Autores principales: Wischnewski, Julia, Bernreuther, Matthias, Kempf, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7661427/
https://www.ncbi.nlm.nih.gov/pubmed/33180197
http://dx.doi.org/10.1007/s10661-020-08668-6
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author Wischnewski, Julia
Bernreuther, Matthias
Kempf, Alexander
author_facet Wischnewski, Julia
Bernreuther, Matthias
Kempf, Alexander
author_sort Wischnewski, Julia
collection PubMed
description The shape of the length frequency distribution (LFD) is an important input for stock assessments and one of the most important features in studies of fish population dynamics, providing estimates of growth parameters. In practice, oversampling may occur when sampling commercially important species. At times of more and more limited resources, the length sample size can be optimized at some stages of national or regional sampling programmes, without reducing the quality of stock assessments. The main objective of this study is to demonstrate a general distribution-free methodological approach for an optimization of sample size developed as an alternative to both analytical and bootstrap approaches. A novel framework to identify the reduced but still informative sample and to quantify the (dis) similarity between reduced and original samples is proposed. The identification procedure is based on the concept of reference subsample, which represents a theoretical minimal representative subsample that despite smaller sample size still preserves a reasonably precise LFD for certain species. The difference between the original sample and the reference subsample called admissible dissimilarity value (ADV) serves as the upper threshold and can be used to quantify the reliability of derived subsamples. Monte Carlo simulations were conducted to validate the approach under various LFD shapes. We illustrate in case studies how ADV can support to evaluate adequate sampling effort. The case studies focus on length samples from the German commercial vessels fishing for North Sea cod (Gadus morhua).
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spelling pubmed-76614272020-11-13 Admissible dissimilarity value (ADV) as a measure of subsampling reliability: case study North Sea cod (Gadus morhua) Wischnewski, Julia Bernreuther, Matthias Kempf, Alexander Environ Monit Assess Article The shape of the length frequency distribution (LFD) is an important input for stock assessments and one of the most important features in studies of fish population dynamics, providing estimates of growth parameters. In practice, oversampling may occur when sampling commercially important species. At times of more and more limited resources, the length sample size can be optimized at some stages of national or regional sampling programmes, without reducing the quality of stock assessments. The main objective of this study is to demonstrate a general distribution-free methodological approach for an optimization of sample size developed as an alternative to both analytical and bootstrap approaches. A novel framework to identify the reduced but still informative sample and to quantify the (dis) similarity between reduced and original samples is proposed. The identification procedure is based on the concept of reference subsample, which represents a theoretical minimal representative subsample that despite smaller sample size still preserves a reasonably precise LFD for certain species. The difference between the original sample and the reference subsample called admissible dissimilarity value (ADV) serves as the upper threshold and can be used to quantify the reliability of derived subsamples. Monte Carlo simulations were conducted to validate the approach under various LFD shapes. We illustrate in case studies how ADV can support to evaluate adequate sampling effort. The case studies focus on length samples from the German commercial vessels fishing for North Sea cod (Gadus morhua). Springer International Publishing 2020-11-12 2020 /pmc/articles/PMC7661427/ /pubmed/33180197 http://dx.doi.org/10.1007/s10661-020-08668-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Wischnewski, Julia
Bernreuther, Matthias
Kempf, Alexander
Admissible dissimilarity value (ADV) as a measure of subsampling reliability: case study North Sea cod (Gadus morhua)
title Admissible dissimilarity value (ADV) as a measure of subsampling reliability: case study North Sea cod (Gadus morhua)
title_full Admissible dissimilarity value (ADV) as a measure of subsampling reliability: case study North Sea cod (Gadus morhua)
title_fullStr Admissible dissimilarity value (ADV) as a measure of subsampling reliability: case study North Sea cod (Gadus morhua)
title_full_unstemmed Admissible dissimilarity value (ADV) as a measure of subsampling reliability: case study North Sea cod (Gadus morhua)
title_short Admissible dissimilarity value (ADV) as a measure of subsampling reliability: case study North Sea cod (Gadus morhua)
title_sort admissible dissimilarity value (adv) as a measure of subsampling reliability: case study north sea cod (gadus morhua)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7661427/
https://www.ncbi.nlm.nih.gov/pubmed/33180197
http://dx.doi.org/10.1007/s10661-020-08668-6
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