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Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs

Structural studies of challenging targets such as G protein-coupled receptors (GPCRs) have accelerated during the last several years due to the development of new approaches, including small-wedge and serial crystallography. Here, we describe the deposition of seven datasets consisting of X-ray diff...

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Autores principales: Marin, Egor, Luginina, Aleksandra, Gusach, Anastasiia, Kovalev, Kirill, Bukhdruker, Sergey, Khorn, Polina, Polovinkin, Vitaly, Lyapina, Elizaveta, Rogachev, Andrey, Gordeliy, Valentin, Mishin, Alexey, Cherezov, Vadim, Borshchevskiy, Valentin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7661540/
https://www.ncbi.nlm.nih.gov/pubmed/33184270
http://dx.doi.org/10.1038/s41597-020-00729-2
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author Marin, Egor
Luginina, Aleksandra
Gusach, Anastasiia
Kovalev, Kirill
Bukhdruker, Sergey
Khorn, Polina
Polovinkin, Vitaly
Lyapina, Elizaveta
Rogachev, Andrey
Gordeliy, Valentin
Mishin, Alexey
Cherezov, Vadim
Borshchevskiy, Valentin
author_facet Marin, Egor
Luginina, Aleksandra
Gusach, Anastasiia
Kovalev, Kirill
Bukhdruker, Sergey
Khorn, Polina
Polovinkin, Vitaly
Lyapina, Elizaveta
Rogachev, Andrey
Gordeliy, Valentin
Mishin, Alexey
Cherezov, Vadim
Borshchevskiy, Valentin
author_sort Marin, Egor
collection PubMed
description Structural studies of challenging targets such as G protein-coupled receptors (GPCRs) have accelerated during the last several years due to the development of new approaches, including small-wedge and serial crystallography. Here, we describe the deposition of seven datasets consisting of X-ray diffraction images acquired from lipidic cubic phase (LCP) grown microcrystals of two human GPCRs, Cysteinyl leukotriene receptors 1 and 2 (CysLT(1)R and CysLT(2)R), in complex with various antagonists. Five datasets were collected using small-wedge synchrotron crystallography (SWSX) at the European Synchrotron Radiation Facility with multiple crystals under cryo-conditions. Two datasets were collected using X-ray free electron laser (XFEL) serial femtosecond crystallography (SFX) at the Linac Coherent Light Source, with microcrystals delivered at room temperature into the beam within LCP matrix by a viscous media microextrusion injector. All seven datasets have been deposited in the open-access databases Zenodo and CXIDB. Here, we describe sample preparation and annotate crystallization conditions for each partial and full datasets. We also document full processing pipelines and provide wrapper scripts for SWSX and SFX data processing.
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spelling pubmed-76615402020-11-17 Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs Marin, Egor Luginina, Aleksandra Gusach, Anastasiia Kovalev, Kirill Bukhdruker, Sergey Khorn, Polina Polovinkin, Vitaly Lyapina, Elizaveta Rogachev, Andrey Gordeliy, Valentin Mishin, Alexey Cherezov, Vadim Borshchevskiy, Valentin Sci Data Data Descriptor Structural studies of challenging targets such as G protein-coupled receptors (GPCRs) have accelerated during the last several years due to the development of new approaches, including small-wedge and serial crystallography. Here, we describe the deposition of seven datasets consisting of X-ray diffraction images acquired from lipidic cubic phase (LCP) grown microcrystals of two human GPCRs, Cysteinyl leukotriene receptors 1 and 2 (CysLT(1)R and CysLT(2)R), in complex with various antagonists. Five datasets were collected using small-wedge synchrotron crystallography (SWSX) at the European Synchrotron Radiation Facility with multiple crystals under cryo-conditions. Two datasets were collected using X-ray free electron laser (XFEL) serial femtosecond crystallography (SFX) at the Linac Coherent Light Source, with microcrystals delivered at room temperature into the beam within LCP matrix by a viscous media microextrusion injector. All seven datasets have been deposited in the open-access databases Zenodo and CXIDB. Here, we describe sample preparation and annotate crystallization conditions for each partial and full datasets. We also document full processing pipelines and provide wrapper scripts for SWSX and SFX data processing. Nature Publishing Group UK 2020-11-12 /pmc/articles/PMC7661540/ /pubmed/33184270 http://dx.doi.org/10.1038/s41597-020-00729-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Marin, Egor
Luginina, Aleksandra
Gusach, Anastasiia
Kovalev, Kirill
Bukhdruker, Sergey
Khorn, Polina
Polovinkin, Vitaly
Lyapina, Elizaveta
Rogachev, Andrey
Gordeliy, Valentin
Mishin, Alexey
Cherezov, Vadim
Borshchevskiy, Valentin
Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs
title Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs
title_full Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs
title_fullStr Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs
title_full_unstemmed Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs
title_short Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs
title_sort small-wedge synchrotron and serial xfel datasets for cysteinyl leukotriene gpcrs
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7661540/
https://www.ncbi.nlm.nih.gov/pubmed/33184270
http://dx.doi.org/10.1038/s41597-020-00729-2
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