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Tn5 Transposase Applied in Genomics Research
The development of high-throughput sequencing (next-generation sequencing technology (NGS)) and the continuous increase in experimental throughput require the upstream sample processing steps of NGS to be as simple as possible to improve the efficiency of the entire NGS process. The transposition sy...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7664229/ https://www.ncbi.nlm.nih.gov/pubmed/33172005 http://dx.doi.org/10.3390/ijms21218329 |
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author | Li, Niannian Jin, Kairang Bai, Yanmin Fu, Haifeng Liu, Lin Liu, Bin |
author_facet | Li, Niannian Jin, Kairang Bai, Yanmin Fu, Haifeng Liu, Lin Liu, Bin |
author_sort | Li, Niannian |
collection | PubMed |
description | The development of high-throughput sequencing (next-generation sequencing technology (NGS)) and the continuous increase in experimental throughput require the upstream sample processing steps of NGS to be as simple as possible to improve the efficiency of the entire NGS process. The transposition system has fast “cut and paste” and “copy and paste” functions, and has been innovatively applied to the NGS field. For example, the Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-Seq) uses high-throughput sequencing to detect chromatin regions accessible by Tn5 transposase. Linear Amplification via Transposon Insertion (LIANTI) uses Tn5 transposase for linear amplification, haploid typing, and structural variation detection. Not only is it efficient and simple, it effectively shortens the time for NGS sample library construction, realizes large-scale and rapid sequencing, improves sequencing resolution, and can be flexibly modified for more technological innovation. |
format | Online Article Text |
id | pubmed-7664229 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-76642292020-11-14 Tn5 Transposase Applied in Genomics Research Li, Niannian Jin, Kairang Bai, Yanmin Fu, Haifeng Liu, Lin Liu, Bin Int J Mol Sci Review The development of high-throughput sequencing (next-generation sequencing technology (NGS)) and the continuous increase in experimental throughput require the upstream sample processing steps of NGS to be as simple as possible to improve the efficiency of the entire NGS process. The transposition system has fast “cut and paste” and “copy and paste” functions, and has been innovatively applied to the NGS field. For example, the Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-Seq) uses high-throughput sequencing to detect chromatin regions accessible by Tn5 transposase. Linear Amplification via Transposon Insertion (LIANTI) uses Tn5 transposase for linear amplification, haploid typing, and structural variation detection. Not only is it efficient and simple, it effectively shortens the time for NGS sample library construction, realizes large-scale and rapid sequencing, improves sequencing resolution, and can be flexibly modified for more technological innovation. MDPI 2020-11-06 /pmc/articles/PMC7664229/ /pubmed/33172005 http://dx.doi.org/10.3390/ijms21218329 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Li, Niannian Jin, Kairang Bai, Yanmin Fu, Haifeng Liu, Lin Liu, Bin Tn5 Transposase Applied in Genomics Research |
title | Tn5 Transposase Applied in Genomics Research |
title_full | Tn5 Transposase Applied in Genomics Research |
title_fullStr | Tn5 Transposase Applied in Genomics Research |
title_full_unstemmed | Tn5 Transposase Applied in Genomics Research |
title_short | Tn5 Transposase Applied in Genomics Research |
title_sort | tn5 transposase applied in genomics research |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7664229/ https://www.ncbi.nlm.nih.gov/pubmed/33172005 http://dx.doi.org/10.3390/ijms21218329 |
work_keys_str_mv | AT liniannian tn5transposaseappliedingenomicsresearch AT jinkairang tn5transposaseappliedingenomicsresearch AT baiyanmin tn5transposaseappliedingenomicsresearch AT fuhaifeng tn5transposaseappliedingenomicsresearch AT liulin tn5transposaseappliedingenomicsresearch AT liubin tn5transposaseappliedingenomicsresearch |