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Tn5 Transposase Applied in Genomics Research

The development of high-throughput sequencing (next-generation sequencing technology (NGS)) and the continuous increase in experimental throughput require the upstream sample processing steps of NGS to be as simple as possible to improve the efficiency of the entire NGS process. The transposition sy...

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Autores principales: Li, Niannian, Jin, Kairang, Bai, Yanmin, Fu, Haifeng, Liu, Lin, Liu, Bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7664229/
https://www.ncbi.nlm.nih.gov/pubmed/33172005
http://dx.doi.org/10.3390/ijms21218329
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author Li, Niannian
Jin, Kairang
Bai, Yanmin
Fu, Haifeng
Liu, Lin
Liu, Bin
author_facet Li, Niannian
Jin, Kairang
Bai, Yanmin
Fu, Haifeng
Liu, Lin
Liu, Bin
author_sort Li, Niannian
collection PubMed
description The development of high-throughput sequencing (next-generation sequencing technology (NGS)) and the continuous increase in experimental throughput require the upstream sample processing steps of NGS to be as simple as possible to improve the efficiency of the entire NGS process. The transposition system has fast “cut and paste” and “copy and paste” functions, and has been innovatively applied to the NGS field. For example, the Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-Seq) uses high-throughput sequencing to detect chromatin regions accessible by Tn5 transposase. Linear Amplification via Transposon Insertion (LIANTI) uses Tn5 transposase for linear amplification, haploid typing, and structural variation detection. Not only is it efficient and simple, it effectively shortens the time for NGS sample library construction, realizes large-scale and rapid sequencing, improves sequencing resolution, and can be flexibly modified for more technological innovation.
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spelling pubmed-76642292020-11-14 Tn5 Transposase Applied in Genomics Research Li, Niannian Jin, Kairang Bai, Yanmin Fu, Haifeng Liu, Lin Liu, Bin Int J Mol Sci Review The development of high-throughput sequencing (next-generation sequencing technology (NGS)) and the continuous increase in experimental throughput require the upstream sample processing steps of NGS to be as simple as possible to improve the efficiency of the entire NGS process. The transposition system has fast “cut and paste” and “copy and paste” functions, and has been innovatively applied to the NGS field. For example, the Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-Seq) uses high-throughput sequencing to detect chromatin regions accessible by Tn5 transposase. Linear Amplification via Transposon Insertion (LIANTI) uses Tn5 transposase for linear amplification, haploid typing, and structural variation detection. Not only is it efficient and simple, it effectively shortens the time for NGS sample library construction, realizes large-scale and rapid sequencing, improves sequencing resolution, and can be flexibly modified for more technological innovation. MDPI 2020-11-06 /pmc/articles/PMC7664229/ /pubmed/33172005 http://dx.doi.org/10.3390/ijms21218329 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Li, Niannian
Jin, Kairang
Bai, Yanmin
Fu, Haifeng
Liu, Lin
Liu, Bin
Tn5 Transposase Applied in Genomics Research
title Tn5 Transposase Applied in Genomics Research
title_full Tn5 Transposase Applied in Genomics Research
title_fullStr Tn5 Transposase Applied in Genomics Research
title_full_unstemmed Tn5 Transposase Applied in Genomics Research
title_short Tn5 Transposase Applied in Genomics Research
title_sort tn5 transposase applied in genomics research
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7664229/
https://www.ncbi.nlm.nih.gov/pubmed/33172005
http://dx.doi.org/10.3390/ijms21218329
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