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Testing structural identifiability by a simple scaling method

Successful mathematical modeling of biological processes relies on the expertise of the modeler to capture the essential mechanisms in the process at hand and on the ability to extract useful information from empirical data. A model is said to be structurally unidentifiable, if different quantitativ...

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Detalles Bibliográficos
Autores principales: Castro, Mario, de Boer, Rob J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7665633/
https://www.ncbi.nlm.nih.gov/pubmed/33141821
http://dx.doi.org/10.1371/journal.pcbi.1008248
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author Castro, Mario
de Boer, Rob J.
author_facet Castro, Mario
de Boer, Rob J.
author_sort Castro, Mario
collection PubMed
description Successful mathematical modeling of biological processes relies on the expertise of the modeler to capture the essential mechanisms in the process at hand and on the ability to extract useful information from empirical data. A model is said to be structurally unidentifiable, if different quantitative sets of parameters provide the same observable outcome. This is typical (but not exclusive) of partially observed problems in which only a few variables can be experimentally measured. Most of the available methods to test the structural identifiability of a model are either too complex mathematically for the general practitioner to be applied, or require involved calculations or numerical computation for complex non-linear models. In this work, we present a new analytical method to test structural identifiability of models based on ordinary differential equations, based on the invariance of the equations under the scaling transformation of its parameters. The method is based on rigorous mathematical results but it is easy and quick to apply, even to test the identifiability of sophisticated highly non-linear models. We illustrate our method by example and compare its performance with other existing methods in the literature.
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spelling pubmed-76656332020-11-18 Testing structural identifiability by a simple scaling method Castro, Mario de Boer, Rob J. PLoS Comput Biol Research Article Successful mathematical modeling of biological processes relies on the expertise of the modeler to capture the essential mechanisms in the process at hand and on the ability to extract useful information from empirical data. A model is said to be structurally unidentifiable, if different quantitative sets of parameters provide the same observable outcome. This is typical (but not exclusive) of partially observed problems in which only a few variables can be experimentally measured. Most of the available methods to test the structural identifiability of a model are either too complex mathematically for the general practitioner to be applied, or require involved calculations or numerical computation for complex non-linear models. In this work, we present a new analytical method to test structural identifiability of models based on ordinary differential equations, based on the invariance of the equations under the scaling transformation of its parameters. The method is based on rigorous mathematical results but it is easy and quick to apply, even to test the identifiability of sophisticated highly non-linear models. We illustrate our method by example and compare its performance with other existing methods in the literature. Public Library of Science 2020-11-03 /pmc/articles/PMC7665633/ /pubmed/33141821 http://dx.doi.org/10.1371/journal.pcbi.1008248 Text en © 2020 Castro, de Boer http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Castro, Mario
de Boer, Rob J.
Testing structural identifiability by a simple scaling method
title Testing structural identifiability by a simple scaling method
title_full Testing structural identifiability by a simple scaling method
title_fullStr Testing structural identifiability by a simple scaling method
title_full_unstemmed Testing structural identifiability by a simple scaling method
title_short Testing structural identifiability by a simple scaling method
title_sort testing structural identifiability by a simple scaling method
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7665633/
https://www.ncbi.nlm.nih.gov/pubmed/33141821
http://dx.doi.org/10.1371/journal.pcbi.1008248
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