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Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network

Significance: Label-free quantitative phase imaging is a promising technique for the automatic detection of abnormal red blood cells (RBCs) in real time. Although deep-learning techniques can accurately detect abnormal RBCs from quantitative phase images efficiently, their applications in diagnostic...

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Autores principales: Lin, Yang-Hsien, Liao, Ken Y.-K., Sung, Kung-Bin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7665881/
https://www.ncbi.nlm.nih.gov/pubmed/33188571
http://dx.doi.org/10.1117/1.JBO.25.11.116502
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author Lin, Yang-Hsien
Liao, Ken Y.-K.
Sung, Kung-Bin
author_facet Lin, Yang-Hsien
Liao, Ken Y.-K.
Sung, Kung-Bin
author_sort Lin, Yang-Hsien
collection PubMed
description Significance: Label-free quantitative phase imaging is a promising technique for the automatic detection of abnormal red blood cells (RBCs) in real time. Although deep-learning techniques can accurately detect abnormal RBCs from quantitative phase images efficiently, their applications in diagnostic testing are limited by the lack of transparency. More interpretable results such as morphological and biochemical characteristics of individual RBCs are highly desirable. Aim: An end-to-end deep-learning model was developed to efficiently discriminate thalassemic RBCs (tRBCs) from healthy RBCs (hRBCs) in quantitative phase images and segment RBCs for single-cell characterization. Approach: Two-dimensional quantitative phase images of hRBCs and tRBCs were acquired using digital holographic microscopy. A mask region-based convolutional neural network (Mask R-CNN) model was trained to discriminate tRBCs and segment individual RBCs. Characterization of tRBCs was achieved utilizing SHapley Additive exPlanation analysis and canonical correlation analysis on automatically segmented RBC phase images. Results: The implemented model achieved 97.8% accuracy in detecting tRBCs. Phase-shift statistics showed the highest influence on the correct classification of tRBCs. Associations between the phase-shift features and three-dimensional morphological features were revealed. Conclusions: The implemented Mask R-CNN model accurately identified tRBCs and segmented RBCs to provide single-RBC characterization, which has the potential to aid clinical decision-making.
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spelling pubmed-76658812020-11-23 Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network Lin, Yang-Hsien Liao, Ken Y.-K. Sung, Kung-Bin J Biomed Opt Microscopy Significance: Label-free quantitative phase imaging is a promising technique for the automatic detection of abnormal red blood cells (RBCs) in real time. Although deep-learning techniques can accurately detect abnormal RBCs from quantitative phase images efficiently, their applications in diagnostic testing are limited by the lack of transparency. More interpretable results such as morphological and biochemical characteristics of individual RBCs are highly desirable. Aim: An end-to-end deep-learning model was developed to efficiently discriminate thalassemic RBCs (tRBCs) from healthy RBCs (hRBCs) in quantitative phase images and segment RBCs for single-cell characterization. Approach: Two-dimensional quantitative phase images of hRBCs and tRBCs were acquired using digital holographic microscopy. A mask region-based convolutional neural network (Mask R-CNN) model was trained to discriminate tRBCs and segment individual RBCs. Characterization of tRBCs was achieved utilizing SHapley Additive exPlanation analysis and canonical correlation analysis on automatically segmented RBC phase images. Results: The implemented model achieved 97.8% accuracy in detecting tRBCs. Phase-shift statistics showed the highest influence on the correct classification of tRBCs. Associations between the phase-shift features and three-dimensional morphological features were revealed. Conclusions: The implemented Mask R-CNN model accurately identified tRBCs and segmented RBCs to provide single-RBC characterization, which has the potential to aid clinical decision-making. Society of Photo-Optical Instrumentation Engineers 2020-11-13 2020-11 /pmc/articles/PMC7665881/ /pubmed/33188571 http://dx.doi.org/10.1117/1.JBO.25.11.116502 Text en © 2020 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Microscopy
Lin, Yang-Hsien
Liao, Ken Y.-K.
Sung, Kung-Bin
Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network
title Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network
title_full Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network
title_fullStr Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network
title_full_unstemmed Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network
title_short Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network
title_sort automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network
topic Microscopy
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7665881/
https://www.ncbi.nlm.nih.gov/pubmed/33188571
http://dx.doi.org/10.1117/1.JBO.25.11.116502
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