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Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network
Significance: Label-free quantitative phase imaging is a promising technique for the automatic detection of abnormal red blood cells (RBCs) in real time. Although deep-learning techniques can accurately detect abnormal RBCs from quantitative phase images efficiently, their applications in diagnostic...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7665881/ https://www.ncbi.nlm.nih.gov/pubmed/33188571 http://dx.doi.org/10.1117/1.JBO.25.11.116502 |
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author | Lin, Yang-Hsien Liao, Ken Y.-K. Sung, Kung-Bin |
author_facet | Lin, Yang-Hsien Liao, Ken Y.-K. Sung, Kung-Bin |
author_sort | Lin, Yang-Hsien |
collection | PubMed |
description | Significance: Label-free quantitative phase imaging is a promising technique for the automatic detection of abnormal red blood cells (RBCs) in real time. Although deep-learning techniques can accurately detect abnormal RBCs from quantitative phase images efficiently, their applications in diagnostic testing are limited by the lack of transparency. More interpretable results such as morphological and biochemical characteristics of individual RBCs are highly desirable. Aim: An end-to-end deep-learning model was developed to efficiently discriminate thalassemic RBCs (tRBCs) from healthy RBCs (hRBCs) in quantitative phase images and segment RBCs for single-cell characterization. Approach: Two-dimensional quantitative phase images of hRBCs and tRBCs were acquired using digital holographic microscopy. A mask region-based convolutional neural network (Mask R-CNN) model was trained to discriminate tRBCs and segment individual RBCs. Characterization of tRBCs was achieved utilizing SHapley Additive exPlanation analysis and canonical correlation analysis on automatically segmented RBC phase images. Results: The implemented model achieved 97.8% accuracy in detecting tRBCs. Phase-shift statistics showed the highest influence on the correct classification of tRBCs. Associations between the phase-shift features and three-dimensional morphological features were revealed. Conclusions: The implemented Mask R-CNN model accurately identified tRBCs and segmented RBCs to provide single-RBC characterization, which has the potential to aid clinical decision-making. |
format | Online Article Text |
id | pubmed-7665881 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-76658812020-11-23 Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network Lin, Yang-Hsien Liao, Ken Y.-K. Sung, Kung-Bin J Biomed Opt Microscopy Significance: Label-free quantitative phase imaging is a promising technique for the automatic detection of abnormal red blood cells (RBCs) in real time. Although deep-learning techniques can accurately detect abnormal RBCs from quantitative phase images efficiently, their applications in diagnostic testing are limited by the lack of transparency. More interpretable results such as morphological and biochemical characteristics of individual RBCs are highly desirable. Aim: An end-to-end deep-learning model was developed to efficiently discriminate thalassemic RBCs (tRBCs) from healthy RBCs (hRBCs) in quantitative phase images and segment RBCs for single-cell characterization. Approach: Two-dimensional quantitative phase images of hRBCs and tRBCs were acquired using digital holographic microscopy. A mask region-based convolutional neural network (Mask R-CNN) model was trained to discriminate tRBCs and segment individual RBCs. Characterization of tRBCs was achieved utilizing SHapley Additive exPlanation analysis and canonical correlation analysis on automatically segmented RBC phase images. Results: The implemented model achieved 97.8% accuracy in detecting tRBCs. Phase-shift statistics showed the highest influence on the correct classification of tRBCs. Associations between the phase-shift features and three-dimensional morphological features were revealed. Conclusions: The implemented Mask R-CNN model accurately identified tRBCs and segmented RBCs to provide single-RBC characterization, which has the potential to aid clinical decision-making. Society of Photo-Optical Instrumentation Engineers 2020-11-13 2020-11 /pmc/articles/PMC7665881/ /pubmed/33188571 http://dx.doi.org/10.1117/1.JBO.25.11.116502 Text en © 2020 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Microscopy Lin, Yang-Hsien Liao, Ken Y.-K. Sung, Kung-Bin Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network |
title | Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network |
title_full | Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network |
title_fullStr | Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network |
title_full_unstemmed | Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network |
title_short | Automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network |
title_sort | automatic detection and characterization of quantitative phase images of thalassemic red blood cells using a mask region-based convolutional neural network |
topic | Microscopy |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7665881/ https://www.ncbi.nlm.nih.gov/pubmed/33188571 http://dx.doi.org/10.1117/1.JBO.25.11.116502 |
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