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Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard

DNA origami, in which a long scaffold strand is assembled with a many short staple strands into parallel arrays of double helices, has proven a powerful method for custom nanofabrication. However, currently the design and optimization of custom 3D DNA-origami shapes is a barrier to rapid application...

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Autores principales: Wickham, Shelley F. J., Auer, Alexander, Min, Jianghong, Ponnuswamy, Nandhini, Woehrstein, Johannes B., Schueder, Florian, Strauss, Maximilian T., Schnitzbauer, Jörg, Nathwani, Bhavik, Zhao, Zhao, Perrault, Steven D., Hahn, Jaeseung, Lee, Seungwoo, Bastings, Maartje M., Helmig, Sarah W., Kodal, Anne Louise, Yin, Peng, Jungmann, Ralf, Shih, William M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7666213/
https://www.ncbi.nlm.nih.gov/pubmed/33188187
http://dx.doi.org/10.1038/s41467-020-18910-x
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author Wickham, Shelley F. J.
Auer, Alexander
Min, Jianghong
Ponnuswamy, Nandhini
Woehrstein, Johannes B.
Schueder, Florian
Strauss, Maximilian T.
Schnitzbauer, Jörg
Nathwani, Bhavik
Zhao, Zhao
Perrault, Steven D.
Hahn, Jaeseung
Lee, Seungwoo
Bastings, Maartje M.
Helmig, Sarah W.
Kodal, Anne Louise
Yin, Peng
Jungmann, Ralf
Shih, William M.
author_facet Wickham, Shelley F. J.
Auer, Alexander
Min, Jianghong
Ponnuswamy, Nandhini
Woehrstein, Johannes B.
Schueder, Florian
Strauss, Maximilian T.
Schnitzbauer, Jörg
Nathwani, Bhavik
Zhao, Zhao
Perrault, Steven D.
Hahn, Jaeseung
Lee, Seungwoo
Bastings, Maartje M.
Helmig, Sarah W.
Kodal, Anne Louise
Yin, Peng
Jungmann, Ralf
Shih, William M.
author_sort Wickham, Shelley F. J.
collection PubMed
description DNA origami, in which a long scaffold strand is assembled with a many short staple strands into parallel arrays of double helices, has proven a powerful method for custom nanofabrication. However, currently the design and optimization of custom 3D DNA-origami shapes is a barrier to rapid application to new areas. Here we introduce a modular barrel architecture, and demonstrate hierarchical assembly of a 100 megadalton DNA-origami barrel of ~90 nm diameter and ~250 nm height, that provides a rhombic-lattice canvas of a thousand pixels each, with pitch of ~8 nm, on its inner and outer surfaces. Complex patterns rendered on these surfaces were resolved using up to twelve rounds of Exchange-PAINT super-resolution microscopy. We envision these structures as versatile nanoscale pegboards for applications requiring complex 3D arrangements of matter, which will serve to promote rapid uptake of this technology in diverse fields beyond specialist groups working in DNA nanotechnology.
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spelling pubmed-76662132020-11-17 Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard Wickham, Shelley F. J. Auer, Alexander Min, Jianghong Ponnuswamy, Nandhini Woehrstein, Johannes B. Schueder, Florian Strauss, Maximilian T. Schnitzbauer, Jörg Nathwani, Bhavik Zhao, Zhao Perrault, Steven D. Hahn, Jaeseung Lee, Seungwoo Bastings, Maartje M. Helmig, Sarah W. Kodal, Anne Louise Yin, Peng Jungmann, Ralf Shih, William M. Nat Commun Article DNA origami, in which a long scaffold strand is assembled with a many short staple strands into parallel arrays of double helices, has proven a powerful method for custom nanofabrication. However, currently the design and optimization of custom 3D DNA-origami shapes is a barrier to rapid application to new areas. Here we introduce a modular barrel architecture, and demonstrate hierarchical assembly of a 100 megadalton DNA-origami barrel of ~90 nm diameter and ~250 nm height, that provides a rhombic-lattice canvas of a thousand pixels each, with pitch of ~8 nm, on its inner and outer surfaces. Complex patterns rendered on these surfaces were resolved using up to twelve rounds of Exchange-PAINT super-resolution microscopy. We envision these structures as versatile nanoscale pegboards for applications requiring complex 3D arrangements of matter, which will serve to promote rapid uptake of this technology in diverse fields beyond specialist groups working in DNA nanotechnology. Nature Publishing Group UK 2020-11-13 /pmc/articles/PMC7666213/ /pubmed/33188187 http://dx.doi.org/10.1038/s41467-020-18910-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Wickham, Shelley F. J.
Auer, Alexander
Min, Jianghong
Ponnuswamy, Nandhini
Woehrstein, Johannes B.
Schueder, Florian
Strauss, Maximilian T.
Schnitzbauer, Jörg
Nathwani, Bhavik
Zhao, Zhao
Perrault, Steven D.
Hahn, Jaeseung
Lee, Seungwoo
Bastings, Maartje M.
Helmig, Sarah W.
Kodal, Anne Louise
Yin, Peng
Jungmann, Ralf
Shih, William M.
Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard
title Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard
title_full Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard
title_fullStr Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard
title_full_unstemmed Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard
title_short Complex multicomponent patterns rendered on a 3D DNA-barrel pegboard
title_sort complex multicomponent patterns rendered on a 3d dna-barrel pegboard
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7666213/
https://www.ncbi.nlm.nih.gov/pubmed/33188187
http://dx.doi.org/10.1038/s41467-020-18910-x
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