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Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer
Gastric cancer is one of the most common and clinically important diseases worldwide. The traditional Laeuren classification divides gastric cancer into two histopathological subtypes: diffuse and intestinal. Recent cancer genomics research has led to the development of a new classification based on...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7666323/ https://www.ncbi.nlm.nih.gov/pubmed/33240471 http://dx.doi.org/10.1016/j.csbj.2020.10.021 |
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author | Ling, Yiwei Watanabe, Yu Nagahashi, Mayuki Shimada, Yoshifumi Ichikawa, Hiroshi Wakai, Toshifumi Okuda, Shujiro |
author_facet | Ling, Yiwei Watanabe, Yu Nagahashi, Mayuki Shimada, Yoshifumi Ichikawa, Hiroshi Wakai, Toshifumi Okuda, Shujiro |
author_sort | Ling, Yiwei |
collection | PubMed |
description | Gastric cancer is one of the most common and clinically important diseases worldwide. The traditional Laeuren classification divides gastric cancer into two histopathological subtypes: diffuse and intestinal. Recent cancer genomics research has led to the development of a new classification based on molecular characteristics. The newly defined genomically stable (GS) subtype shares many cases with the histopathologically diffuse type. In this study, we performed genetic profiling of recurrently and significantly mutated genes in diffuse type and GS subtype tumors. We observed significantly different genetic characteristics, although the two subtypes overlapped in many cases. In addition, based on the profiles of the significantly mutated genes, we identified molecular functions and mutational signatures characteristic of each subtype. These results will advance the clinical application of the diffuse type and GS subtype gastric cancer in precision medicine for treating gastric cancer. |
format | Online Article Text |
id | pubmed-7666323 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-76663232020-11-24 Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer Ling, Yiwei Watanabe, Yu Nagahashi, Mayuki Shimada, Yoshifumi Ichikawa, Hiroshi Wakai, Toshifumi Okuda, Shujiro Comput Struct Biotechnol J Research Article Gastric cancer is one of the most common and clinically important diseases worldwide. The traditional Laeuren classification divides gastric cancer into two histopathological subtypes: diffuse and intestinal. Recent cancer genomics research has led to the development of a new classification based on molecular characteristics. The newly defined genomically stable (GS) subtype shares many cases with the histopathologically diffuse type. In this study, we performed genetic profiling of recurrently and significantly mutated genes in diffuse type and GS subtype tumors. We observed significantly different genetic characteristics, although the two subtypes overlapped in many cases. In addition, based on the profiles of the significantly mutated genes, we identified molecular functions and mutational signatures characteristic of each subtype. These results will advance the clinical application of the diffuse type and GS subtype gastric cancer in precision medicine for treating gastric cancer. Research Network of Computational and Structural Biotechnology 2020-10-29 /pmc/articles/PMC7666323/ /pubmed/33240471 http://dx.doi.org/10.1016/j.csbj.2020.10.021 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Research Article Ling, Yiwei Watanabe, Yu Nagahashi, Mayuki Shimada, Yoshifumi Ichikawa, Hiroshi Wakai, Toshifumi Okuda, Shujiro Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer |
title | Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer |
title_full | Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer |
title_fullStr | Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer |
title_full_unstemmed | Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer |
title_short | Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer |
title_sort | genetic profiling for diffuse type and genomically stable subtypes in gastric cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7666323/ https://www.ncbi.nlm.nih.gov/pubmed/33240471 http://dx.doi.org/10.1016/j.csbj.2020.10.021 |
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