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Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer

Gastric cancer is one of the most common and clinically important diseases worldwide. The traditional Laeuren classification divides gastric cancer into two histopathological subtypes: diffuse and intestinal. Recent cancer genomics research has led to the development of a new classification based on...

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Autores principales: Ling, Yiwei, Watanabe, Yu, Nagahashi, Mayuki, Shimada, Yoshifumi, Ichikawa, Hiroshi, Wakai, Toshifumi, Okuda, Shujiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7666323/
https://www.ncbi.nlm.nih.gov/pubmed/33240471
http://dx.doi.org/10.1016/j.csbj.2020.10.021
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author Ling, Yiwei
Watanabe, Yu
Nagahashi, Mayuki
Shimada, Yoshifumi
Ichikawa, Hiroshi
Wakai, Toshifumi
Okuda, Shujiro
author_facet Ling, Yiwei
Watanabe, Yu
Nagahashi, Mayuki
Shimada, Yoshifumi
Ichikawa, Hiroshi
Wakai, Toshifumi
Okuda, Shujiro
author_sort Ling, Yiwei
collection PubMed
description Gastric cancer is one of the most common and clinically important diseases worldwide. The traditional Laeuren classification divides gastric cancer into two histopathological subtypes: diffuse and intestinal. Recent cancer genomics research has led to the development of a new classification based on molecular characteristics. The newly defined genomically stable (GS) subtype shares many cases with the histopathologically diffuse type. In this study, we performed genetic profiling of recurrently and significantly mutated genes in diffuse type and GS subtype tumors. We observed significantly different genetic characteristics, although the two subtypes overlapped in many cases. In addition, based on the profiles of the significantly mutated genes, we identified molecular functions and mutational signatures characteristic of each subtype. These results will advance the clinical application of the diffuse type and GS subtype gastric cancer in precision medicine for treating gastric cancer.
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spelling pubmed-76663232020-11-24 Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer Ling, Yiwei Watanabe, Yu Nagahashi, Mayuki Shimada, Yoshifumi Ichikawa, Hiroshi Wakai, Toshifumi Okuda, Shujiro Comput Struct Biotechnol J Research Article Gastric cancer is one of the most common and clinically important diseases worldwide. The traditional Laeuren classification divides gastric cancer into two histopathological subtypes: diffuse and intestinal. Recent cancer genomics research has led to the development of a new classification based on molecular characteristics. The newly defined genomically stable (GS) subtype shares many cases with the histopathologically diffuse type. In this study, we performed genetic profiling of recurrently and significantly mutated genes in diffuse type and GS subtype tumors. We observed significantly different genetic characteristics, although the two subtypes overlapped in many cases. In addition, based on the profiles of the significantly mutated genes, we identified molecular functions and mutational signatures characteristic of each subtype. These results will advance the clinical application of the diffuse type and GS subtype gastric cancer in precision medicine for treating gastric cancer. Research Network of Computational and Structural Biotechnology 2020-10-29 /pmc/articles/PMC7666323/ /pubmed/33240471 http://dx.doi.org/10.1016/j.csbj.2020.10.021 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Ling, Yiwei
Watanabe, Yu
Nagahashi, Mayuki
Shimada, Yoshifumi
Ichikawa, Hiroshi
Wakai, Toshifumi
Okuda, Shujiro
Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer
title Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer
title_full Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer
title_fullStr Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer
title_full_unstemmed Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer
title_short Genetic profiling for diffuse type and genomically stable subtypes in gastric cancer
title_sort genetic profiling for diffuse type and genomically stable subtypes in gastric cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7666323/
https://www.ncbi.nlm.nih.gov/pubmed/33240471
http://dx.doi.org/10.1016/j.csbj.2020.10.021
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