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Modelling the structural and reactivity landscapes of tucatinib with special reference to its wavefunction-dependent properties and screening for potential antiviral activity
HER-2 type breast cancer is one of the most aggressive malignancies found in women. Tucatinib is recently developed and approved as a potential medicine to fight this disease. In this manuscript, we present the gross structural features of this compound and its reactivity and wave function propertie...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7668570/ https://www.ncbi.nlm.nih.gov/pubmed/33200284 http://dx.doi.org/10.1007/s00894-020-04603-1 |
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author | Alsalme, Ali Pooventhiran, T. Al-Zaqri, Nabil Rao, D. Jagadeeswara Rao, Siriki Srinivasa Thomas, Renjith |
author_facet | Alsalme, Ali Pooventhiran, T. Al-Zaqri, Nabil Rao, D. Jagadeeswara Rao, Siriki Srinivasa Thomas, Renjith |
author_sort | Alsalme, Ali |
collection | PubMed |
description | HER-2 type breast cancer is one of the most aggressive malignancies found in women. Tucatinib is recently developed and approved as a potential medicine to fight this disease. In this manuscript, we present the gross structural features of this compound and its reactivity and wave function properties using computational simulations. Density functional theory was used to optimise the ground state geometry of the molecule and molecular docking was used to predict biological activity. As the electrons interact with electromagnetic radiations, electronic excitations between different energy levels are analysed in detail using time-dependent density functional theory. Various intermolecular and intermolecular interactions are analysed and reaction sites for attacking electrophiles and nucleophiles identified. Information entropy calculations show that the compound is inherently stable. Docking with COVID-19 proteins show docking score of − 9.42, − 8.93, − 8.45 and − 8.32 kcal/mol respectively indicating high interaction between the drug and proteins. Hence, this is an ideal candidate to study repurposing of existing drugs to combat the pandemic. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00894-020-04603-1. |
format | Online Article Text |
id | pubmed-7668570 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-76685702020-11-18 Modelling the structural and reactivity landscapes of tucatinib with special reference to its wavefunction-dependent properties and screening for potential antiviral activity Alsalme, Ali Pooventhiran, T. Al-Zaqri, Nabil Rao, D. Jagadeeswara Rao, Siriki Srinivasa Thomas, Renjith J Mol Model Original Paper HER-2 type breast cancer is one of the most aggressive malignancies found in women. Tucatinib is recently developed and approved as a potential medicine to fight this disease. In this manuscript, we present the gross structural features of this compound and its reactivity and wave function properties using computational simulations. Density functional theory was used to optimise the ground state geometry of the molecule and molecular docking was used to predict biological activity. As the electrons interact with electromagnetic radiations, electronic excitations between different energy levels are analysed in detail using time-dependent density functional theory. Various intermolecular and intermolecular interactions are analysed and reaction sites for attacking electrophiles and nucleophiles identified. Information entropy calculations show that the compound is inherently stable. Docking with COVID-19 proteins show docking score of − 9.42, − 8.93, − 8.45 and − 8.32 kcal/mol respectively indicating high interaction between the drug and proteins. Hence, this is an ideal candidate to study repurposing of existing drugs to combat the pandemic. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00894-020-04603-1. Springer Berlin Heidelberg 2020-11-16 2020 /pmc/articles/PMC7668570/ /pubmed/33200284 http://dx.doi.org/10.1007/s00894-020-04603-1 Text en © Springer-Verlag GmbH Germany, part of Springer Nature 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Original Paper Alsalme, Ali Pooventhiran, T. Al-Zaqri, Nabil Rao, D. Jagadeeswara Rao, Siriki Srinivasa Thomas, Renjith Modelling the structural and reactivity landscapes of tucatinib with special reference to its wavefunction-dependent properties and screening for potential antiviral activity |
title | Modelling the structural and reactivity landscapes of tucatinib with special reference to its wavefunction-dependent properties and screening for potential antiviral activity |
title_full | Modelling the structural and reactivity landscapes of tucatinib with special reference to its wavefunction-dependent properties and screening for potential antiviral activity |
title_fullStr | Modelling the structural and reactivity landscapes of tucatinib with special reference to its wavefunction-dependent properties and screening for potential antiviral activity |
title_full_unstemmed | Modelling the structural and reactivity landscapes of tucatinib with special reference to its wavefunction-dependent properties and screening for potential antiviral activity |
title_short | Modelling the structural and reactivity landscapes of tucatinib with special reference to its wavefunction-dependent properties and screening for potential antiviral activity |
title_sort | modelling the structural and reactivity landscapes of tucatinib with special reference to its wavefunction-dependent properties and screening for potential antiviral activity |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7668570/ https://www.ncbi.nlm.nih.gov/pubmed/33200284 http://dx.doi.org/10.1007/s00894-020-04603-1 |
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