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The ambiguity of nestedness under soft and hard constraints
Many real networks feature the property of nestedness, i.e. the neighbours of nodes with a few connections are hierarchically nested within the neighbours of nodes with more connections. Despite the abstract simplicity of this notion, various mathematical definitions of nestedness have been proposed...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7669898/ https://www.ncbi.nlm.nih.gov/pubmed/33199720 http://dx.doi.org/10.1038/s41598-020-76300-1 |
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author | Bruno, Matteo Saracco, Fabio Garlaschelli, Diego Tessone, Claudio J. Caldarelli, Guido |
author_facet | Bruno, Matteo Saracco, Fabio Garlaschelli, Diego Tessone, Claudio J. Caldarelli, Guido |
author_sort | Bruno, Matteo |
collection | PubMed |
description | Many real networks feature the property of nestedness, i.e. the neighbours of nodes with a few connections are hierarchically nested within the neighbours of nodes with more connections. Despite the abstract simplicity of this notion, various mathematical definitions of nestedness have been proposed, sometimes giving contrasting results. Moreover, there is an ongoing debate on the statistical significance of nestedness, since random networks where the number of connections (degree) of each node is fixed to its empirical value are typically as nested as real ones. By using only ergodic and unbiased null models, we propose a clarification that exploits the recent finding that random networks where the degrees are enforced as hard constraints (microcanonical ensembles) are thermodynamically different from random networks where the degrees are enforced as soft constraints (canonical ensembles). Indeed, alternative definitions of nestedness can be negatively correlated in the microcanonical one, while being positively correlated in the canonical one. This result disentangles distinct notions of nestedness captured by different metrics and highlights the importance of making a principled choice between hard and soft constraints in null models of ecological networks. |
format | Online Article Text |
id | pubmed-7669898 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-76698982020-11-18 The ambiguity of nestedness under soft and hard constraints Bruno, Matteo Saracco, Fabio Garlaschelli, Diego Tessone, Claudio J. Caldarelli, Guido Sci Rep Article Many real networks feature the property of nestedness, i.e. the neighbours of nodes with a few connections are hierarchically nested within the neighbours of nodes with more connections. Despite the abstract simplicity of this notion, various mathematical definitions of nestedness have been proposed, sometimes giving contrasting results. Moreover, there is an ongoing debate on the statistical significance of nestedness, since random networks where the number of connections (degree) of each node is fixed to its empirical value are typically as nested as real ones. By using only ergodic and unbiased null models, we propose a clarification that exploits the recent finding that random networks where the degrees are enforced as hard constraints (microcanonical ensembles) are thermodynamically different from random networks where the degrees are enforced as soft constraints (canonical ensembles). Indeed, alternative definitions of nestedness can be negatively correlated in the microcanonical one, while being positively correlated in the canonical one. This result disentangles distinct notions of nestedness captured by different metrics and highlights the importance of making a principled choice between hard and soft constraints in null models of ecological networks. Nature Publishing Group UK 2020-11-16 /pmc/articles/PMC7669898/ /pubmed/33199720 http://dx.doi.org/10.1038/s41598-020-76300-1 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Bruno, Matteo Saracco, Fabio Garlaschelli, Diego Tessone, Claudio J. Caldarelli, Guido The ambiguity of nestedness under soft and hard constraints |
title | The ambiguity of nestedness under soft and hard constraints |
title_full | The ambiguity of nestedness under soft and hard constraints |
title_fullStr | The ambiguity of nestedness under soft and hard constraints |
title_full_unstemmed | The ambiguity of nestedness under soft and hard constraints |
title_short | The ambiguity of nestedness under soft and hard constraints |
title_sort | ambiguity of nestedness under soft and hard constraints |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7669898/ https://www.ncbi.nlm.nih.gov/pubmed/33199720 http://dx.doi.org/10.1038/s41598-020-76300-1 |
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