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Bibliometric Analysis of ATAC-Seq and Its Use in Cancer Biology via Nucleic Acid Detection

Assay for transposase-accessible chromatin using sequencing (ATAC-seq) is associated with significant progress in biological research and has attracted increasing attention. However, the impact of ATAC-seq on cancer biology has not been objectively analyzed. We categorized 440 ATAC-seq publications...

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Autores principales: Zhao, Yu, Zhang, Xianwen, Song, Zhenhua, Wei, Danian, Wang, Hong, Chen, Wei, Sun, Guodong, Ma, Weiying, Chen, Kebing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670091/
https://www.ncbi.nlm.nih.gov/pubmed/33224964
http://dx.doi.org/10.3389/fmed.2020.584728
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author Zhao, Yu
Zhang, Xianwen
Song, Zhenhua
Wei, Danian
Wang, Hong
Chen, Wei
Sun, Guodong
Ma, Weiying
Chen, Kebing
author_facet Zhao, Yu
Zhang, Xianwen
Song, Zhenhua
Wei, Danian
Wang, Hong
Chen, Wei
Sun, Guodong
Ma, Weiying
Chen, Kebing
author_sort Zhao, Yu
collection PubMed
description Assay for transposase-accessible chromatin using sequencing (ATAC-seq) is associated with significant progress in biological research and has attracted increasing attention. However, the impact of ATAC-seq on cancer biology has not been objectively analyzed. We categorized 440 ATAC-seq publications according to the publication date, type, field, and country. R 3.6.2 was used to analyze the distribution of research fields. VOSviewer was used for country co-authorship and author co-authorship analyses, and GraphPad Prism 8 was used for correlation analyses of the factors that may affect the number of articles published in different countries. We found that ATAC-seq plays roles in carcinogenesis, anticancer immunity, targeted therapy, and metastasis risk predictions and is most frequently used in studies of leukemia among all types of cancer. We found a significantly strong correlation between the top 10 countries in terms of the number of publications and the gross expenditure on research and development (R&D), the number of universities, and the number of researchers. At present, ATAC-seq technology is undergoing a period of rapid development, making it inseparable from the emphasis and investment in scientific research by many countries. Collectively, ATAC-seq has advantages in the study of the cancer mechanisms because it can detect nucleic acids and thus has good application prospects in the field of cancer, especially in leukemia studies. As a country's economic strength increases and the emphasis on scientific research deepens, ATAC-seq will definitely play a more significant role in the field of cancer biology.
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spelling pubmed-76700912020-11-20 Bibliometric Analysis of ATAC-Seq and Its Use in Cancer Biology via Nucleic Acid Detection Zhao, Yu Zhang, Xianwen Song, Zhenhua Wei, Danian Wang, Hong Chen, Wei Sun, Guodong Ma, Weiying Chen, Kebing Front Med (Lausanne) Medicine Assay for transposase-accessible chromatin using sequencing (ATAC-seq) is associated with significant progress in biological research and has attracted increasing attention. However, the impact of ATAC-seq on cancer biology has not been objectively analyzed. We categorized 440 ATAC-seq publications according to the publication date, type, field, and country. R 3.6.2 was used to analyze the distribution of research fields. VOSviewer was used for country co-authorship and author co-authorship analyses, and GraphPad Prism 8 was used for correlation analyses of the factors that may affect the number of articles published in different countries. We found that ATAC-seq plays roles in carcinogenesis, anticancer immunity, targeted therapy, and metastasis risk predictions and is most frequently used in studies of leukemia among all types of cancer. We found a significantly strong correlation between the top 10 countries in terms of the number of publications and the gross expenditure on research and development (R&D), the number of universities, and the number of researchers. At present, ATAC-seq technology is undergoing a period of rapid development, making it inseparable from the emphasis and investment in scientific research by many countries. Collectively, ATAC-seq has advantages in the study of the cancer mechanisms because it can detect nucleic acids and thus has good application prospects in the field of cancer, especially in leukemia studies. As a country's economic strength increases and the emphasis on scientific research deepens, ATAC-seq will definitely play a more significant role in the field of cancer biology. Frontiers Media S.A. 2020-11-03 /pmc/articles/PMC7670091/ /pubmed/33224964 http://dx.doi.org/10.3389/fmed.2020.584728 Text en Copyright © 2020 Zhao, Zhang, Song, Wei, Wang, Chen, Sun, Ma and Chen. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Zhao, Yu
Zhang, Xianwen
Song, Zhenhua
Wei, Danian
Wang, Hong
Chen, Wei
Sun, Guodong
Ma, Weiying
Chen, Kebing
Bibliometric Analysis of ATAC-Seq and Its Use in Cancer Biology via Nucleic Acid Detection
title Bibliometric Analysis of ATAC-Seq and Its Use in Cancer Biology via Nucleic Acid Detection
title_full Bibliometric Analysis of ATAC-Seq and Its Use in Cancer Biology via Nucleic Acid Detection
title_fullStr Bibliometric Analysis of ATAC-Seq and Its Use in Cancer Biology via Nucleic Acid Detection
title_full_unstemmed Bibliometric Analysis of ATAC-Seq and Its Use in Cancer Biology via Nucleic Acid Detection
title_short Bibliometric Analysis of ATAC-Seq and Its Use in Cancer Biology via Nucleic Acid Detection
title_sort bibliometric analysis of atac-seq and its use in cancer biology via nucleic acid detection
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670091/
https://www.ncbi.nlm.nih.gov/pubmed/33224964
http://dx.doi.org/10.3389/fmed.2020.584728
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