GIANT: galaxy-based tool for interactive analysis of transcriptomic data

Transcriptomic analyses are broadly used in biomedical research calling for tools allowing biologists to be directly involved in data mining and interpretation. We present here GIANT, a Galaxy-based tool for Interactive ANalysis of Transcriptomic data, which consists of biologist-friendly tools dedi...

Descripción completa

Detalles Bibliográficos
Autores principales: Vandel, Jimmy, Gheeraert, Céline, Staels, Bart, Eeckhoute, Jérôme, Lefebvre, Philippe, Dubois-Chevalier, Julie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670435/
https://www.ncbi.nlm.nih.gov/pubmed/33199699
http://dx.doi.org/10.1038/s41598-020-76769-w
_version_ 1783610737234542592
author Vandel, Jimmy
Gheeraert, Céline
Staels, Bart
Eeckhoute, Jérôme
Lefebvre, Philippe
Dubois-Chevalier, Julie
author_facet Vandel, Jimmy
Gheeraert, Céline
Staels, Bart
Eeckhoute, Jérôme
Lefebvre, Philippe
Dubois-Chevalier, Julie
author_sort Vandel, Jimmy
collection PubMed
description Transcriptomic analyses are broadly used in biomedical research calling for tools allowing biologists to be directly involved in data mining and interpretation. We present here GIANT, a Galaxy-based tool for Interactive ANalysis of Transcriptomic data, which consists of biologist-friendly tools dedicated to analyses of transcriptomic data from microarray or RNA-seq analyses. GIANT is organized into modules allowing researchers to tailor their analyses by choosing the specific set of tool(s) to analyse any type of preprocessed transcriptomic data. It also includes a series of tools dedicated to the handling of raw Affymetrix microarray data. GIANT brings easy-to-use solutions to biologists for transcriptomic data mining and interpretation.
format Online
Article
Text
id pubmed-7670435
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-76704352020-11-18 GIANT: galaxy-based tool for interactive analysis of transcriptomic data Vandel, Jimmy Gheeraert, Céline Staels, Bart Eeckhoute, Jérôme Lefebvre, Philippe Dubois-Chevalier, Julie Sci Rep Article Transcriptomic analyses are broadly used in biomedical research calling for tools allowing biologists to be directly involved in data mining and interpretation. We present here GIANT, a Galaxy-based tool for Interactive ANalysis of Transcriptomic data, which consists of biologist-friendly tools dedicated to analyses of transcriptomic data from microarray or RNA-seq analyses. GIANT is organized into modules allowing researchers to tailor their analyses by choosing the specific set of tool(s) to analyse any type of preprocessed transcriptomic data. It also includes a series of tools dedicated to the handling of raw Affymetrix microarray data. GIANT brings easy-to-use solutions to biologists for transcriptomic data mining and interpretation. Nature Publishing Group UK 2020-11-16 /pmc/articles/PMC7670435/ /pubmed/33199699 http://dx.doi.org/10.1038/s41598-020-76769-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Vandel, Jimmy
Gheeraert, Céline
Staels, Bart
Eeckhoute, Jérôme
Lefebvre, Philippe
Dubois-Chevalier, Julie
GIANT: galaxy-based tool for interactive analysis of transcriptomic data
title GIANT: galaxy-based tool for interactive analysis of transcriptomic data
title_full GIANT: galaxy-based tool for interactive analysis of transcriptomic data
title_fullStr GIANT: galaxy-based tool for interactive analysis of transcriptomic data
title_full_unstemmed GIANT: galaxy-based tool for interactive analysis of transcriptomic data
title_short GIANT: galaxy-based tool for interactive analysis of transcriptomic data
title_sort giant: galaxy-based tool for interactive analysis of transcriptomic data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670435/
https://www.ncbi.nlm.nih.gov/pubmed/33199699
http://dx.doi.org/10.1038/s41598-020-76769-w
work_keys_str_mv AT vandeljimmy giantgalaxybasedtoolforinteractiveanalysisoftranscriptomicdata
AT gheeraertceline giantgalaxybasedtoolforinteractiveanalysisoftranscriptomicdata
AT staelsbart giantgalaxybasedtoolforinteractiveanalysisoftranscriptomicdata
AT eeckhoutejerome giantgalaxybasedtoolforinteractiveanalysisoftranscriptomicdata
AT lefebvrephilippe giantgalaxybasedtoolforinteractiveanalysisoftranscriptomicdata
AT duboischevalierjulie giantgalaxybasedtoolforinteractiveanalysisoftranscriptomicdata

Ejemplares similares