Cargando…
Identification prognosis-associated immune genes in colon adenocarcinoma
Colon adenocarcinoma (COAD) is one of the most prevalent malignant tumors worldwide. Immune genes (IGs) have a considerable correlation with tumor initiation and prognosis. The present paper aims to identify the prognosis value of IGs in COAD and conduct a prognosis model for clinical utility. Gene...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Portland Press Ltd.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670579/ https://www.ncbi.nlm.nih.gov/pubmed/33140821 http://dx.doi.org/10.1042/BSR20201734 |
_version_ | 1783610766685896704 |
---|---|
author | Miao, Yandong Wang, Jiangtao Ma, Xueping Yang, Yuan Mi, Denghai |
author_facet | Miao, Yandong Wang, Jiangtao Ma, Xueping Yang, Yuan Mi, Denghai |
author_sort | Miao, Yandong |
collection | PubMed |
description | Colon adenocarcinoma (COAD) is one of the most prevalent malignant tumors worldwide. Immune genes (IGs) have a considerable correlation with tumor initiation and prognosis. The present paper aims to identify the prognosis value of IGs in COAD and conduct a prognosis model for clinical utility. Gene expression data of COAD were downloaded from The Cancer Genome Atlas (TCGA), screening and analyzing differentially expressed IGs by bioinformatics. Core genes were screened by univariate and multivariate Cox regression analyses. Survival analysis was appraised by the Kaplan–Meier method and the log-rank test. Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Gene Set Enrichment Analysis (GSEA) were used to identify IGs’ relevant signal pathways. We predicted the overall survival (OS) by nomogram. Finally, a prognosis model was conducted based on 12 IGs (SLC10A2, CXCL3, NOX4, FABP4, ADIPOQ, IGKV1-33, IGLV6-57, INHBA, UCN, VIP, NGFR, and TRDC). The risk score was an independent prognostic factor, and a nomogram could accurately predict the OS of individual COAD patients. These results were validated in GSE39582, GSE12945, and GSE103479 cohorts. Functional enrichment analysis demonstrated that these IGs are mainly enriched in hormone secretion, hormone transport, lipid transport, cytokine–cytokine receptor interaction, and peroxisome proliferators-activated receptor signaling pathway. In summary, the risk score is an independent prognostic biomarker. We also excavated several IGs related to COAD’s survival and maybe potential biomarkers for COAD diagnosis and treatment. |
format | Online Article Text |
id | pubmed-7670579 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Portland Press Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-76705792020-11-19 Identification prognosis-associated immune genes in colon adenocarcinoma Miao, Yandong Wang, Jiangtao Ma, Xueping Yang, Yuan Mi, Denghai Biosci Rep Gene Expression & Regulation Colon adenocarcinoma (COAD) is one of the most prevalent malignant tumors worldwide. Immune genes (IGs) have a considerable correlation with tumor initiation and prognosis. The present paper aims to identify the prognosis value of IGs in COAD and conduct a prognosis model for clinical utility. Gene expression data of COAD were downloaded from The Cancer Genome Atlas (TCGA), screening and analyzing differentially expressed IGs by bioinformatics. Core genes were screened by univariate and multivariate Cox regression analyses. Survival analysis was appraised by the Kaplan–Meier method and the log-rank test. Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Gene Set Enrichment Analysis (GSEA) were used to identify IGs’ relevant signal pathways. We predicted the overall survival (OS) by nomogram. Finally, a prognosis model was conducted based on 12 IGs (SLC10A2, CXCL3, NOX4, FABP4, ADIPOQ, IGKV1-33, IGLV6-57, INHBA, UCN, VIP, NGFR, and TRDC). The risk score was an independent prognostic factor, and a nomogram could accurately predict the OS of individual COAD patients. These results were validated in GSE39582, GSE12945, and GSE103479 cohorts. Functional enrichment analysis demonstrated that these IGs are mainly enriched in hormone secretion, hormone transport, lipid transport, cytokine–cytokine receptor interaction, and peroxisome proliferators-activated receptor signaling pathway. In summary, the risk score is an independent prognostic biomarker. We also excavated several IGs related to COAD’s survival and maybe potential biomarkers for COAD diagnosis and treatment. Portland Press Ltd. 2020-11-17 /pmc/articles/PMC7670579/ /pubmed/33140821 http://dx.doi.org/10.1042/BSR20201734 Text en © 2020 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY). |
spellingShingle | Gene Expression & Regulation Miao, Yandong Wang, Jiangtao Ma, Xueping Yang, Yuan Mi, Denghai Identification prognosis-associated immune genes in colon adenocarcinoma |
title | Identification prognosis-associated immune genes in colon adenocarcinoma |
title_full | Identification prognosis-associated immune genes in colon adenocarcinoma |
title_fullStr | Identification prognosis-associated immune genes in colon adenocarcinoma |
title_full_unstemmed | Identification prognosis-associated immune genes in colon adenocarcinoma |
title_short | Identification prognosis-associated immune genes in colon adenocarcinoma |
title_sort | identification prognosis-associated immune genes in colon adenocarcinoma |
topic | Gene Expression & Regulation |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670579/ https://www.ncbi.nlm.nih.gov/pubmed/33140821 http://dx.doi.org/10.1042/BSR20201734 |
work_keys_str_mv | AT miaoyandong identificationprognosisassociatedimmunegenesincolonadenocarcinoma AT wangjiangtao identificationprognosisassociatedimmunegenesincolonadenocarcinoma AT maxueping identificationprognosisassociatedimmunegenesincolonadenocarcinoma AT yangyuan identificationprognosisassociatedimmunegenesincolonadenocarcinoma AT midenghai identificationprognosisassociatedimmunegenesincolonadenocarcinoma |