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Identification prognosis-associated immune genes in colon adenocarcinoma

Colon adenocarcinoma (COAD) is one of the most prevalent malignant tumors worldwide. Immune genes (IGs) have a considerable correlation with tumor initiation and prognosis. The present paper aims to identify the prognosis value of IGs in COAD and conduct a prognosis model for clinical utility. Gene...

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Autores principales: Miao, Yandong, Wang, Jiangtao, Ma, Xueping, Yang, Yuan, Mi, Denghai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670579/
https://www.ncbi.nlm.nih.gov/pubmed/33140821
http://dx.doi.org/10.1042/BSR20201734
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author Miao, Yandong
Wang, Jiangtao
Ma, Xueping
Yang, Yuan
Mi, Denghai
author_facet Miao, Yandong
Wang, Jiangtao
Ma, Xueping
Yang, Yuan
Mi, Denghai
author_sort Miao, Yandong
collection PubMed
description Colon adenocarcinoma (COAD) is one of the most prevalent malignant tumors worldwide. Immune genes (IGs) have a considerable correlation with tumor initiation and prognosis. The present paper aims to identify the prognosis value of IGs in COAD and conduct a prognosis model for clinical utility. Gene expression data of COAD were downloaded from The Cancer Genome Atlas (TCGA), screening and analyzing differentially expressed IGs by bioinformatics. Core genes were screened by univariate and multivariate Cox regression analyses. Survival analysis was appraised by the Kaplan–Meier method and the log-rank test. Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Gene Set Enrichment Analysis (GSEA) were used to identify IGs’ relevant signal pathways. We predicted the overall survival (OS) by nomogram. Finally, a prognosis model was conducted based on 12 IGs (SLC10A2, CXCL3, NOX4, FABP4, ADIPOQ, IGKV1-33, IGLV6-57, INHBA, UCN, VIP, NGFR, and TRDC). The risk score was an independent prognostic factor, and a nomogram could accurately predict the OS of individual COAD patients. These results were validated in GSE39582, GSE12945, and GSE103479 cohorts. Functional enrichment analysis demonstrated that these IGs are mainly enriched in hormone secretion, hormone transport, lipid transport, cytokine–cytokine receptor interaction, and peroxisome proliferators-activated receptor signaling pathway. In summary, the risk score is an independent prognostic biomarker. We also excavated several IGs related to COAD’s survival and maybe potential biomarkers for COAD diagnosis and treatment.
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spelling pubmed-76705792020-11-19 Identification prognosis-associated immune genes in colon adenocarcinoma Miao, Yandong Wang, Jiangtao Ma, Xueping Yang, Yuan Mi, Denghai Biosci Rep Gene Expression & Regulation Colon adenocarcinoma (COAD) is one of the most prevalent malignant tumors worldwide. Immune genes (IGs) have a considerable correlation with tumor initiation and prognosis. The present paper aims to identify the prognosis value of IGs in COAD and conduct a prognosis model for clinical utility. Gene expression data of COAD were downloaded from The Cancer Genome Atlas (TCGA), screening and analyzing differentially expressed IGs by bioinformatics. Core genes were screened by univariate and multivariate Cox regression analyses. Survival analysis was appraised by the Kaplan–Meier method and the log-rank test. Gene Ontology, Kyoto Encyclopedia of Genes and Genomes, and Gene Set Enrichment Analysis (GSEA) were used to identify IGs’ relevant signal pathways. We predicted the overall survival (OS) by nomogram. Finally, a prognosis model was conducted based on 12 IGs (SLC10A2, CXCL3, NOX4, FABP4, ADIPOQ, IGKV1-33, IGLV6-57, INHBA, UCN, VIP, NGFR, and TRDC). The risk score was an independent prognostic factor, and a nomogram could accurately predict the OS of individual COAD patients. These results were validated in GSE39582, GSE12945, and GSE103479 cohorts. Functional enrichment analysis demonstrated that these IGs are mainly enriched in hormone secretion, hormone transport, lipid transport, cytokine–cytokine receptor interaction, and peroxisome proliferators-activated receptor signaling pathway. In summary, the risk score is an independent prognostic biomarker. We also excavated several IGs related to COAD’s survival and maybe potential biomarkers for COAD diagnosis and treatment. Portland Press Ltd. 2020-11-17 /pmc/articles/PMC7670579/ /pubmed/33140821 http://dx.doi.org/10.1042/BSR20201734 Text en © 2020 The Author(s). https://creativecommons.org/licenses/by/4.0/ This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY).
spellingShingle Gene Expression & Regulation
Miao, Yandong
Wang, Jiangtao
Ma, Xueping
Yang, Yuan
Mi, Denghai
Identification prognosis-associated immune genes in colon adenocarcinoma
title Identification prognosis-associated immune genes in colon adenocarcinoma
title_full Identification prognosis-associated immune genes in colon adenocarcinoma
title_fullStr Identification prognosis-associated immune genes in colon adenocarcinoma
title_full_unstemmed Identification prognosis-associated immune genes in colon adenocarcinoma
title_short Identification prognosis-associated immune genes in colon adenocarcinoma
title_sort identification prognosis-associated immune genes in colon adenocarcinoma
topic Gene Expression & Regulation
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670579/
https://www.ncbi.nlm.nih.gov/pubmed/33140821
http://dx.doi.org/10.1042/BSR20201734
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