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Analyses of metastasis-associated genes in IDH wild-type glioma
BACKGROUND: Glioma is the most common malignant tumor of the brain. The existence of metastatic tumor cells is an important cause of recurrence even after radical glioma resection. METHODS: Single-cell sequencing data and high-throughput data were downloaded from GEO database and TCGA/CGGA database....
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670782/ https://www.ncbi.nlm.nih.gov/pubmed/33198677 http://dx.doi.org/10.1186/s12885-020-07628-0 |
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author | Li, Xiaozhi Meng, Yutong |
author_facet | Li, Xiaozhi Meng, Yutong |
author_sort | Li, Xiaozhi |
collection | PubMed |
description | BACKGROUND: Glioma is the most common malignant tumor of the brain. The existence of metastatic tumor cells is an important cause of recurrence even after radical glioma resection. METHODS: Single-cell sequencing data and high-throughput data were downloaded from GEO database and TCGA/CGGA database. By means of PCA and tSNE clustering methods, metastasis-associated genes in glioma were identified. GSEA explored possible biological functions that these metastasis-associated genes may participate in. Univariate and multivariate Cox regression were used to construct a prognostic model. RESULTS: Glioma metastatic cells and metastasis-associated genes were identified. The prognostic model based on metastasis-associated genes had good sensitivity and specificity for the prognosis of glioma. These genes may be involved in signal pathways such as cellular protein catabolic process, p53 signaling pathway, transcriptional misregulation in cancer and JAK-STAT signaling pathway. CONCLUSION: This study explored glioma metastasis-associated genes through single-cell sequencing data mining, and aimed to identify prognostic metastasis-associated signatures for glioma and may provide potential targets for further cancer research. |
format | Online Article Text |
id | pubmed-7670782 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-76707822020-11-18 Analyses of metastasis-associated genes in IDH wild-type glioma Li, Xiaozhi Meng, Yutong BMC Cancer Research Article BACKGROUND: Glioma is the most common malignant tumor of the brain. The existence of metastatic tumor cells is an important cause of recurrence even after radical glioma resection. METHODS: Single-cell sequencing data and high-throughput data were downloaded from GEO database and TCGA/CGGA database. By means of PCA and tSNE clustering methods, metastasis-associated genes in glioma were identified. GSEA explored possible biological functions that these metastasis-associated genes may participate in. Univariate and multivariate Cox regression were used to construct a prognostic model. RESULTS: Glioma metastatic cells and metastasis-associated genes were identified. The prognostic model based on metastasis-associated genes had good sensitivity and specificity for the prognosis of glioma. These genes may be involved in signal pathways such as cellular protein catabolic process, p53 signaling pathway, transcriptional misregulation in cancer and JAK-STAT signaling pathway. CONCLUSION: This study explored glioma metastasis-associated genes through single-cell sequencing data mining, and aimed to identify prognostic metastasis-associated signatures for glioma and may provide potential targets for further cancer research. BioMed Central 2020-11-16 /pmc/articles/PMC7670782/ /pubmed/33198677 http://dx.doi.org/10.1186/s12885-020-07628-0 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Li, Xiaozhi Meng, Yutong Analyses of metastasis-associated genes in IDH wild-type glioma |
title | Analyses of metastasis-associated genes in IDH wild-type glioma |
title_full | Analyses of metastasis-associated genes in IDH wild-type glioma |
title_fullStr | Analyses of metastasis-associated genes in IDH wild-type glioma |
title_full_unstemmed | Analyses of metastasis-associated genes in IDH wild-type glioma |
title_short | Analyses of metastasis-associated genes in IDH wild-type glioma |
title_sort | analyses of metastasis-associated genes in idh wild-type glioma |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7670782/ https://www.ncbi.nlm.nih.gov/pubmed/33198677 http://dx.doi.org/10.1186/s12885-020-07628-0 |
work_keys_str_mv | AT lixiaozhi analysesofmetastasisassociatedgenesinidhwildtypeglioma AT mengyutong analysesofmetastasisassociatedgenesinidhwildtypeglioma |