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Molecular dynamics performance for coronavirus simulation by C, N, O, and S atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic Fe, Al, and steel

Coronavirus causes some illnesses to include cold, COVID-19, MERS, and SARS. This virus can be transmitted through contact with different atomic matrix between humans. So, this atomic is essential in medical cases. In this work, we describe the atomic manner of this virus in contact with various met...

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Autores principales: Karimipour, Aliakbar, Amini, Ali, Nouri, Mohammad, D’Orazio, Annunziata, Sabetvand, Roozbeh, Hekmatifar, Maboud, Marjani, Azam, Bach, Quang-vu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671182/
https://www.ncbi.nlm.nih.gov/pubmed/33224712
http://dx.doi.org/10.1007/s40571-020-00367-w
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author Karimipour, Aliakbar
Amini, Ali
Nouri, Mohammad
D’Orazio, Annunziata
Sabetvand, Roozbeh
Hekmatifar, Maboud
Marjani, Azam
Bach, Quang-vu
author_facet Karimipour, Aliakbar
Amini, Ali
Nouri, Mohammad
D’Orazio, Annunziata
Sabetvand, Roozbeh
Hekmatifar, Maboud
Marjani, Azam
Bach, Quang-vu
author_sort Karimipour, Aliakbar
collection PubMed
description Coronavirus causes some illnesses to include cold, COVID-19, MERS, and SARS. This virus can be transmitted through contact with different atomic matrix between humans. So, this atomic is essential in medical cases. In this work, we describe the atomic manner of this virus in contact with various metallic matrix such as Fe, Al, and steel with equilibrium molecular dynamic method. For this purpose, we reported physical properties such as temperature, total energy, distance and angle of structures, mutual energy, and volume variation of coronavirus. In this approach, coronavirus is precisely simulated by O, C, S, and N atoms and they are implemented dreiding force field. Our simulation shows that virus interaction with steel matrix causes the maximum removing of the virus from the surfaces. After 1 ns, the atomic distance between these two structures increases from 45 to 75 Å. Furthermore, the volume of coronavirus 14.62% increases after interaction with steel matrix. This atomic manner shows that coronavirus removes and destroyed with steel surface, and this metallic structure can be a promising material for use in medical applications.
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spelling pubmed-76711822020-11-18 Molecular dynamics performance for coronavirus simulation by C, N, O, and S atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic Fe, Al, and steel Karimipour, Aliakbar Amini, Ali Nouri, Mohammad D’Orazio, Annunziata Sabetvand, Roozbeh Hekmatifar, Maboud Marjani, Azam Bach, Quang-vu Comput Part Mech Article Coronavirus causes some illnesses to include cold, COVID-19, MERS, and SARS. This virus can be transmitted through contact with different atomic matrix between humans. So, this atomic is essential in medical cases. In this work, we describe the atomic manner of this virus in contact with various metallic matrix such as Fe, Al, and steel with equilibrium molecular dynamic method. For this purpose, we reported physical properties such as temperature, total energy, distance and angle of structures, mutual energy, and volume variation of coronavirus. In this approach, coronavirus is precisely simulated by O, C, S, and N atoms and they are implemented dreiding force field. Our simulation shows that virus interaction with steel matrix causes the maximum removing of the virus from the surfaces. After 1 ns, the atomic distance between these two structures increases from 45 to 75 Å. Furthermore, the volume of coronavirus 14.62% increases after interaction with steel matrix. This atomic manner shows that coronavirus removes and destroyed with steel surface, and this metallic structure can be a promising material for use in medical applications. Springer International Publishing 2020-11-17 2021 /pmc/articles/PMC7671182/ /pubmed/33224712 http://dx.doi.org/10.1007/s40571-020-00367-w Text en © OWZ 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Karimipour, Aliakbar
Amini, Ali
Nouri, Mohammad
D’Orazio, Annunziata
Sabetvand, Roozbeh
Hekmatifar, Maboud
Marjani, Azam
Bach, Quang-vu
Molecular dynamics performance for coronavirus simulation by C, N, O, and S atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic Fe, Al, and steel
title Molecular dynamics performance for coronavirus simulation by C, N, O, and S atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic Fe, Al, and steel
title_full Molecular dynamics performance for coronavirus simulation by C, N, O, and S atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic Fe, Al, and steel
title_fullStr Molecular dynamics performance for coronavirus simulation by C, N, O, and S atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic Fe, Al, and steel
title_full_unstemmed Molecular dynamics performance for coronavirus simulation by C, N, O, and S atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic Fe, Al, and steel
title_short Molecular dynamics performance for coronavirus simulation by C, N, O, and S atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic Fe, Al, and steel
title_sort molecular dynamics performance for coronavirus simulation by c, n, o, and s atoms implementation dreiding force field: drug delivery atomic interaction in contact with metallic fe, al, and steel
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671182/
https://www.ncbi.nlm.nih.gov/pubmed/33224712
http://dx.doi.org/10.1007/s40571-020-00367-w
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