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A chloroplast genome of Forsythia saxatilis (Nakai) Nakai, an endemic species in Korea

Forsythia saxatilis (Nakai) Nakai is an endemic species in Korea. We present the second complete chloroplast genome sequence of F. saxatilis showing that the chloroplast genome is 156,376 bp in length containing four subregions: a large single-copy (LSC) region of 87,097 bp, a small single-copy (SSC...

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Autores principales: Choi, Sang Chul, Kim, Sangtae
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671593/
https://www.ncbi.nlm.nih.gov/pubmed/33367083
http://dx.doi.org/10.1080/23802359.2020.1834889
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author Choi, Sang Chul
Kim, Sangtae
author_facet Choi, Sang Chul
Kim, Sangtae
author_sort Choi, Sang Chul
collection PubMed
description Forsythia saxatilis (Nakai) Nakai is an endemic species in Korea. We present the second complete chloroplast genome sequence of F. saxatilis showing that the chloroplast genome is 156,376 bp in length containing four subregions: a large single-copy (LSC) region of 87,097 bp, a small single-copy (SSC) region of 17,859 bp, and a pair of inverted repeat regions (IRs) of 25,710 bp. The genome contains 131 genes including 88 protein-coding genes, 35 tRNAs, and eight rRNAs. We found 40 base differences in 17 sites between our chloroplast genome and the previously reported chloroplast genome sequences of F. saxatilis. All of the differences were found in a region of 832 bp in the LSC region except for one site, which indicated potential sequencing errors in building the previously reported genome because of little substitutions in the homologous region of the other Forsythia species and even of Abeliophyllum distichum, a sister to Forsythia. The new chloroplast genomes of F. saxatilis and those of F. x intermedia and F. viridissima are identical, which suggests that F. saxatilis is maternally closely related to the other two species.
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spelling pubmed-76715932020-12-22 A chloroplast genome of Forsythia saxatilis (Nakai) Nakai, an endemic species in Korea Choi, Sang Chul Kim, Sangtae Mitochondrial DNA B Resour Mitogenome Announcement Forsythia saxatilis (Nakai) Nakai is an endemic species in Korea. We present the second complete chloroplast genome sequence of F. saxatilis showing that the chloroplast genome is 156,376 bp in length containing four subregions: a large single-copy (LSC) region of 87,097 bp, a small single-copy (SSC) region of 17,859 bp, and a pair of inverted repeat regions (IRs) of 25,710 bp. The genome contains 131 genes including 88 protein-coding genes, 35 tRNAs, and eight rRNAs. We found 40 base differences in 17 sites between our chloroplast genome and the previously reported chloroplast genome sequences of F. saxatilis. All of the differences were found in a region of 832 bp in the LSC region except for one site, which indicated potential sequencing errors in building the previously reported genome because of little substitutions in the homologous region of the other Forsythia species and even of Abeliophyllum distichum, a sister to Forsythia. The new chloroplast genomes of F. saxatilis and those of F. x intermedia and F. viridissima are identical, which suggests that F. saxatilis is maternally closely related to the other two species. Taylor & Francis 2020-11-13 /pmc/articles/PMC7671593/ /pubmed/33367083 http://dx.doi.org/10.1080/23802359.2020.1834889 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Choi, Sang Chul
Kim, Sangtae
A chloroplast genome of Forsythia saxatilis (Nakai) Nakai, an endemic species in Korea
title A chloroplast genome of Forsythia saxatilis (Nakai) Nakai, an endemic species in Korea
title_full A chloroplast genome of Forsythia saxatilis (Nakai) Nakai, an endemic species in Korea
title_fullStr A chloroplast genome of Forsythia saxatilis (Nakai) Nakai, an endemic species in Korea
title_full_unstemmed A chloroplast genome of Forsythia saxatilis (Nakai) Nakai, an endemic species in Korea
title_short A chloroplast genome of Forsythia saxatilis (Nakai) Nakai, an endemic species in Korea
title_sort chloroplast genome of forsythia saxatilis (nakai) nakai, an endemic species in korea
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671593/
https://www.ncbi.nlm.nih.gov/pubmed/33367083
http://dx.doi.org/10.1080/23802359.2020.1834889
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