Cargando…
Complete chloroplast genome sequence of Murraya paniculata (Rutaceae): a widely used folk medicinal herb
Murraya paniculate, is traditionally used for management of gut, air way and cardiovascular disorders. In this study, we sequenced the complete chloroplast genome of M. paniculata based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of M. panicula...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671698/ https://www.ncbi.nlm.nih.gov/pubmed/33367064 http://dx.doi.org/10.1080/23802359.2020.1829518 |
_version_ | 1783610976547897344 |
---|---|
author | Liu, Huihui Zhao, Yuyang Zhou, Junhui Ma, Qing Wang, Xinhong Hua, Zhongyi |
author_facet | Liu, Huihui Zhao, Yuyang Zhou, Junhui Ma, Qing Wang, Xinhong Hua, Zhongyi |
author_sort | Liu, Huihui |
collection | PubMed |
description | Murraya paniculate, is traditionally used for management of gut, air way and cardiovascular disorders. In this study, we sequenced the complete chloroplast genome of M. paniculata based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of M. paniculata is 160,280 bp in length consisting of large and small single-copy regions of length 87,605 and 18,609 bp, separated by two IR regions of 27,033 bp. The overall GC content was 38.61%. De novo assembly and annotation showed the presence of unique genes with 85 protein-coding genes, 29 tRNA genes, and eight rRNA genes. A maximum-likelihood phylogenomic analysis showed that M. paniculata was closely related to M. caloxylon. |
format | Online Article Text |
id | pubmed-7671698 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-76716982020-12-22 Complete chloroplast genome sequence of Murraya paniculata (Rutaceae): a widely used folk medicinal herb Liu, Huihui Zhao, Yuyang Zhou, Junhui Ma, Qing Wang, Xinhong Hua, Zhongyi Mitochondrial DNA B Resour Mitogenome Announcement Murraya paniculate, is traditionally used for management of gut, air way and cardiovascular disorders. In this study, we sequenced the complete chloroplast genome of M. paniculata based on next-generation sequencing and used the data to assess genomic resources. The chloroplast genome of M. paniculata is 160,280 bp in length consisting of large and small single-copy regions of length 87,605 and 18,609 bp, separated by two IR regions of 27,033 bp. The overall GC content was 38.61%. De novo assembly and annotation showed the presence of unique genes with 85 protein-coding genes, 29 tRNA genes, and eight rRNA genes. A maximum-likelihood phylogenomic analysis showed that M. paniculata was closely related to M. caloxylon. Taylor & Francis 2020-11-11 /pmc/articles/PMC7671698/ /pubmed/33367064 http://dx.doi.org/10.1080/23802359.2020.1829518 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Liu, Huihui Zhao, Yuyang Zhou, Junhui Ma, Qing Wang, Xinhong Hua, Zhongyi Complete chloroplast genome sequence of Murraya paniculata (Rutaceae): a widely used folk medicinal herb |
title | Complete chloroplast genome sequence of Murraya paniculata (Rutaceae): a widely used folk medicinal herb |
title_full | Complete chloroplast genome sequence of Murraya paniculata (Rutaceae): a widely used folk medicinal herb |
title_fullStr | Complete chloroplast genome sequence of Murraya paniculata (Rutaceae): a widely used folk medicinal herb |
title_full_unstemmed | Complete chloroplast genome sequence of Murraya paniculata (Rutaceae): a widely used folk medicinal herb |
title_short | Complete chloroplast genome sequence of Murraya paniculata (Rutaceae): a widely used folk medicinal herb |
title_sort | complete chloroplast genome sequence of murraya paniculata (rutaceae): a widely used folk medicinal herb |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7671698/ https://www.ncbi.nlm.nih.gov/pubmed/33367064 http://dx.doi.org/10.1080/23802359.2020.1829518 |
work_keys_str_mv | AT liuhuihui completechloroplastgenomesequenceofmurrayapaniculatarutaceaeawidelyusedfolkmedicinalherb AT zhaoyuyang completechloroplastgenomesequenceofmurrayapaniculatarutaceaeawidelyusedfolkmedicinalherb AT zhoujunhui completechloroplastgenomesequenceofmurrayapaniculatarutaceaeawidelyusedfolkmedicinalherb AT maqing completechloroplastgenomesequenceofmurrayapaniculatarutaceaeawidelyusedfolkmedicinalherb AT wangxinhong completechloroplastgenomesequenceofmurrayapaniculatarutaceaeawidelyusedfolkmedicinalherb AT huazhongyi completechloroplastgenomesequenceofmurrayapaniculatarutaceaeawidelyusedfolkmedicinalherb |